Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 AL356488.2-201ENST00000602755 427 ntBASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 AC019129.2-201ENST00000609837 1235 ntBASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 AC005593.1-201ENST00000624894 515 ntBASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 PCDHA12-202ENST00000613593 2588 ntBASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 AC092865.5-201ENST00000545435 363 ntBASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 GPALPP1-207ENST00000611650 899 ntBASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 AL589182.2-201ENST00000619332 1049 ntBASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLIP3Q96DZ5 KRT18P55-202ENST00000578578 1546 ntBASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 AC148477.5-201ENST00000625164 1645 ntBASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 KRT18P13-201ENST00000400056 1290 ntBASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 MED15P5-201ENST00000423150 992 ntBASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 UNC93B6-202ENST00000528242 690 ntBASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 AC027601.4-201ENST00000611259 610 ntBASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 PGM5P2-202ENST00000637225 1043 ntBASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLIP3Q96DZ5 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms