Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 KLF4P1-201ENST00000412782 1185 ntBASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 SPDYE21P-201ENST00000413323 827 ntBASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 POLD2P1-201ENST00000511220 997 ntBASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 AL139288.1-201ENST00000623748 933 ntBASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHMP4CQ96CF2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 AC098831.1-202ENST00000438821 336 ntBASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4CQ96CF2 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 AL353593.2-201ENST00000602529 1483 ntBASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4CQ96CF2 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 AC104109.2-201ENST00000602919 1418 ntBASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 AC046185.3-201ENST00000623228 1824 ntBASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 AL022326.1-202ENST00000641533 845 ntBASIC20.44■□□□□ 0.86
CHMP4CQ96CF2 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms