Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 AC021087.4-201ENST00000563761 564 ntBASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 AC139887.3-201ENST00000568585 713 ntBASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 PCDHA12-202ENST00000613593 2588 ntBASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE3Q6ZMZ3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 TPM4P1-201ENST00000436100 807 ntBASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 FAM197Y8-203ENST00000450145 560 ntBASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE3Q6ZMZ3 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 LINC02012-201ENST00000608206 1725 ntBASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 EGFEM1P-202ENST00000431685 1563 ntBASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE3Q6ZMZ3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 SLC25A1P3-201ENST00000395415 828 ntBASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 AF186996.4-201ENST00000467186 377 ntBASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms