Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.54■□□□□ 0.4
VCANP13611 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
VCANP13611 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.54■□□□□ 0.4
VCANP13611 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.54■□□□□ 0.4
VCANP13611 AC008267.7-201ENST00000624570 1194 ntBASIC17.54■□□□□ 0.4
VCANP13611 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.54■□□□□ 0.4
VCANP13611 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCANP13611 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.53■□□□□ 0.4
VCANP13611 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.53■□□□□ 0.4
VCANP13611 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 MYCLP2-201ENST00000449268 967 ntBASIC17.53■□□□□ 0.4
VCANP13611 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.53■□□□□ 0.4
VCANP13611 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.53■□□□□ 0.4
VCANP13611 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.53■□□□□ 0.4
VCANP13611 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.53■□□□□ 0.4
VCANP13611 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.53■□□□□ 0.4
VCANP13611 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.53■□□□□ 0.4
VCANP13611 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.53■□□□□ 0.4
VCANP13611 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VCANP13611 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.53■□□□□ 0.4
VCANP13611 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.53■□□□□ 0.4
VCANP13611 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.53■□□□□ 0.4
VCANP13611 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCANP13611 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.53■□□□□ 0.4
VCANP13611 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.53■□□□□ 0.4
VCANP13611 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.53■□□□□ 0.4
VCANP13611 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCANP13611 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCANP13611 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.52■□□□□ 0.4
VCANP13611 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.52■□□□□ 0.4
VCANP13611 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.52■□□□□ 0.4
VCANP13611 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCANP13611 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCANP13611 ACTG1P17-201ENST00000558391 1119 ntBASIC17.52■□□□□ 0.4
VCANP13611 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.52■□□□□ 0.4
VCANP13611 AC010319.3-201ENST00000597028 470 ntBASIC17.52■□□□□ 0.4
VCANP13611 U62317.3-201ENST00000608319 855 ntBASIC17.52■□□□□ 0.4
VCANP13611 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.52■□□□□ 0.4
VCANP13611 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCANP13611 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCANP13611 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCANP13611 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
VCANP13611 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCANP13611 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCANP13611 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VCANP13611 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCANP13611 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.52■□□□□ 0.39
VCANP13611 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
VCANP13611 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VCANP13611 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.52■□□□□ 0.39
VCANP13611 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
VCANP13611 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.39
VCANP13611 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.39
VCANP13611 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.52■□□□□ 0.39
VCANP13611 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCANP13611 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCANP13611 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VCANP13611 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.51■□□□□ 0.39
VCANP13611 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC17.51■□□□□ 0.39
VCANP13611 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.51■□□□□ 0.39
VCANP13611 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
VCANP13611 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.51■□□□□ 0.39
VCANP13611 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.51■□□□□ 0.39
VCANP13611 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.51■□□□□ 0.39
VCANP13611 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.51■□□□□ 0.39
VCANP13611 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
VCANP13611 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.51■□□□□ 0.39
VCANP13611 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.51■□□□□ 0.39
VCANP13611 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCANP13611 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.51■□□□□ 0.39
VCANP13611 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.51■□□□□ 0.39
VCANP13611 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.51■□□□□ 0.39
VCANP13611 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.51■□□□□ 0.39
VCANP13611 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms