Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AP001094.4-201ENST00000579008 2176 ntBASIC17.26■□□□□ 0.35
LHX3Q9UBR4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LHX3Q9UBR4 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 AC010507.1-201ENST00000633895 436 ntBASIC17.25■□□□□ 0.35
LHX3Q9UBR4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 AC060834.1-201ENST00000443027 2032 ntBASIC17.25■□□□□ 0.35
LHX3Q9UBR4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LHX3Q9UBR4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 PGAM5P1-201ENST00000518923 814 ntBASIC17.24■□□□□ 0.35
LHX3Q9UBR4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 AC018845.2-201ENST00000568326 409 ntBASIC17.24■□□□□ 0.35
LHX3Q9UBR4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 ACTL9-202ENST00000612068 1252 ntBASIC17.24■□□□□ 0.35
LHX3Q9UBR4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 HTR7P1-202ENST00000624664 4411 ntBASIC17.24■□□□□ 0.35
LHX3Q9UBR4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.24■□□□□ 0.35
LHX3Q9UBR4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 AC129492.6-201ENST00000611383 1305 ntBASIC17.23■□□□□ 0.35
LHX3Q9UBR4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 FAM185BP-201ENST00000443595 716 ntBASIC17.23■□□□□ 0.35
LHX3Q9UBR4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 CXCL1P1-201ENST00000502804 216 ntBASIC17.23■□□□□ 0.35
LHX3Q9UBR4 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 RNA5SP416-201ENST00000516838 111 ntBASIC17.23■□□□□ 0.35
LHX3Q9UBR4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 AC092068.3-201ENST00000587894 2016 ntBASIC17.23■□□□□ 0.35
LHX3Q9UBR4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms