Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 AC011840.4-201ENST00000578471 627 ntBASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 AC090616.6-201ENST00000582640 721 ntBASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM56Q9BRZ2 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRIM56Q9BRZ2 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 AL121956.5-201ENST00000625261 221 ntBASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 AL118508.1-201ENST00000613502 2345 ntBASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRIM56Q9BRZ2 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms