Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 RARRES2P9-201ENST00000565168 469 ntBASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 AL161938.1-201ENST00000569833 2180 ntBASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 AL844908.2-201ENST00000609461 460 ntBASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 MIR6775-201ENST00000617557 69 ntBASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 AL109936.8-201ENST00000641772 604 ntBASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
SMC1BQ8NDV3 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 USB1-203ENST00000539737 1212 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 IGHV3OR16-16-201ENST00000563644 343 ntBASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 CHCHD2P3-201ENST00000603038 451 ntBASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMC1BQ8NDV3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AC135586.1-201ENST00000539323 574 ntBASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AC103810.3-201ENST00000583567 96 ntBASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 TEX28P1-201ENST00000613479 1221 ntBASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 TEX28P2-201ENST00000617764 1221 ntBASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AC012569.1-201ENST00000591191 1524 ntBASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 AC020907.1-201ENST00000616460 1350 ntBASIC20.21■□□□□ 0.83
SMC1BQ8NDV3 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 BNIP3P42-201ENST00000454982 569 ntBASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 AC093004.1-201ENST00000508850 424 ntBASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 AC005412.3-201ENST00000580309 715 ntBASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 BNIP3P29-201ENST00000598302 571 ntBASIC20.2■□□□□ 0.82
SMC1BQ8NDV3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms