Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HDAC4P56524 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HDAC4P56524 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 SCARNA2-201ENST00000458748 420 ntBASIC17.96■□□□□ 0.47
HDAC4P56524 KRT126P-201ENST00000549467 1181 ntBASIC17.96■□□□□ 0.47
HDAC4P56524 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.96■□□□□ 0.47
HDAC4P56524 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.96■□□□□ 0.47
HDAC4P56524 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HDAC4P56524 RN7SL510P-201ENST00000581311 263 ntBASIC17.96■□□□□ 0.47
HDAC4P56524 MTDHP4-201ENST00000600287 670 ntBASIC17.96■□□□□ 0.47
HDAC4P56524 AC025062.2-201ENST00000605477 670 ntBASIC17.96■□□□□ 0.47
HDAC4P56524 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HDAC4P56524 TP73-AS1-207ENST00000624167 988 ntBASIC17.96■□□□□ 0.47
HDAC4P56524 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC4P56524 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
HDAC4P56524 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.96■□□□□ 0.46
HDAC4P56524 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HDAC4P56524 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.95■□□□□ 0.46
HDAC4P56524 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.95■□□□□ 0.46
HDAC4P56524 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.95■□□□□ 0.46
HDAC4P56524 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
HDAC4P56524 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.95■□□□□ 0.46
HDAC4P56524 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.95■□□□□ 0.46
HDAC4P56524 AL353135.1-201ENST00000606729 504 ntBASIC17.95■□□□□ 0.46
HDAC4P56524 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.95■□□□□ 0.46
HDAC4P56524 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HDAC4P56524 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.95■□□□□ 0.46
HDAC4P56524 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.95■□□□□ 0.46
HDAC4P56524 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
HDAC4P56524 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
HDAC4P56524 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.95■□□□□ 0.46
HDAC4P56524 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HDAC4P56524 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HDAC4P56524 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HDAC4P56524 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.94■□□□□ 0.46
HDAC4P56524 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.94■□□□□ 0.46
HDAC4P56524 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.94■□□□□ 0.46
HDAC4P56524 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.94■□□□□ 0.46
HDAC4P56524 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
HDAC4P56524 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.94■□□□□ 0.46
HDAC4P56524 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 AL121912.1-201ENST00000603683 238 ntBASIC17.94■□□□□ 0.46
HDAC4P56524 AL589182.2-201ENST00000619332 1049 ntBASIC17.94■□□□□ 0.46
HDAC4P56524 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.94■□□□□ 0.46
HDAC4P56524 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
HDAC4P56524 NCF1C-201ENST00000438382 1427 ntBASIC17.94■□□□□ 0.46
HDAC4P56524 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.94■□□□□ 0.46
HDAC4P56524 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HDAC4P56524 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HDAC4P56524 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.94■□□□□ 0.46
HDAC4P56524 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.94■□□□□ 0.46
HDAC4P56524 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HDAC4P56524 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
HDAC4P56524 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.93■□□□□ 0.46
HDAC4P56524 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms