Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PMS2P7-201ENST00000506558 1336 ntBASIC19.29■□□□□ 0.68
CIITAP33076 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.29■□□□□ 0.68
CIITAP33076 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.29■□□□□ 0.68
CIITAP33076 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 CXCL1P1-201ENST00000502804 216 ntBASIC19.29■□□□□ 0.68
CIITAP33076 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.29■□□□□ 0.68
CIITAP33076 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.29■□□□□ 0.68
CIITAP33076 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 AC010507.1-201ENST00000633895 436 ntBASIC19.29■□□□□ 0.68
CIITAP33076 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.29■□□□□ 0.68
CIITAP33076 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CIITAP33076 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CIITAP33076 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CIITAP33076 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.28■□□□□ 0.68
CIITAP33076 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.28■□□□□ 0.68
CIITAP33076 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CIITAP33076 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CIITAP33076 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CIITAP33076 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.28■□□□□ 0.68
CIITAP33076 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 MIR940-201ENST00000401276 94 ntBASIC19.28■□□□□ 0.68
CIITAP33076 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.28■□□□□ 0.68
CIITAP33076 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.28■□□□□ 0.68
CIITAP33076 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.28■□□□□ 0.68
CIITAP33076 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.28■□□□□ 0.68
CIITAP33076 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.28■□□□□ 0.68
CIITAP33076 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CIITAP33076 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.28■□□□□ 0.68
CIITAP33076 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CIITAP33076 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.28■□□□□ 0.68
CIITAP33076 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.28■□□□□ 0.68
CIITAP33076 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CIITAP33076 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.28■□□□□ 0.68
CIITAP33076 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.27■□□□□ 0.68
CIITAP33076 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.27■□□□□ 0.68
CIITAP33076 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CIITAP33076 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.27■□□□□ 0.68
CIITAP33076 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.27■□□□□ 0.68
CIITAP33076 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.27■□□□□ 0.68
CIITAP33076 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.27■□□□□ 0.68
CIITAP33076 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CIITAP33076 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.27■□□□□ 0.68
CIITAP33076 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CIITAP33076 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CIITAP33076 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CIITAP33076 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.27■□□□□ 0.67
CIITAP33076 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CIITAP33076 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CIITAP33076 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.27■□□□□ 0.67
CIITAP33076 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CIITAP33076 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
CIITAP33076 HTR7P1-202ENST00000624664 4411 ntBASIC19.26■□□□□ 0.67
CIITAP33076 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.26■□□□□ 0.67
CIITAP33076 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.26■□□□□ 0.67
CIITAP33076 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CIITAP33076 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms