Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.3■□□□□ 0.2
COL5A1P20908 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.3■□□□□ 0.2
COL5A1P20908 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL5A1P20908 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 AC133963.1-201ENST00000504166 1679 ntBASIC16.3■□□□□ 0.2
COL5A1P20908 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
COL5A1P20908 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.3■□□□□ 0.2
COL5A1P20908 RN7SL692P-201ENST00000464677 288 ntBASIC16.3■□□□□ 0.2
COL5A1P20908 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.3■□□□□ 0.2
COL5A1P20908 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.3■□□□□ 0.2
COL5A1P20908 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.3■□□□□ 0.2
COL5A1P20908 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
COL5A1P20908 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.3■□□□□ 0.2
COL5A1P20908 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.3■□□□□ 0.2
COL5A1P20908 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.3■□□□□ 0.2
COL5A1P20908 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.3■□□□□ 0.2
COL5A1P20908 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.3■□□□□ 0.2
COL5A1P20908 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.3■□□□□ 0.2
COL5A1P20908 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
COL5A1P20908 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
COL5A1P20908 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC16.3■□□□□ 0.2
COL5A1P20908 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL5A1P20908 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL5A1P20908 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.29■□□□□ 0.2
COL5A1P20908 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL5A1P20908 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 SERBP1P5-201ENST00000510079 1181 ntBASIC16.29■□□□□ 0.2
COL5A1P20908 AC105233.2-201ENST00000523697 349 ntBASIC16.29■□□□□ 0.2
COL5A1P20908 AF228730.5-201ENST00000530288 346 ntBASIC16.29■□□□□ 0.2
COL5A1P20908 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
COL5A1P20908 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
COL5A1P20908 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.29■□□□□ 0.2
COL5A1P20908 AL590560.3-201ENST00000623350 461 ntBASIC16.29■□□□□ 0.2
COL5A1P20908 AC073592.8-201ENST00000624126 511 ntBASIC16.29■□□□□ 0.2
COL5A1P20908 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.29■□□□□ 0.2
COL5A1P20908 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
COL5A1P20908 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 MIR346-201ENST00000362234 95 ntBASIC16.29■□□□□ 0.2
COL5A1P20908 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 HLA-V-201ENST00000429037 534 ntBASIC16.29■□□□□ 0.2
COL5A1P20908 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.29■□□□□ 0.2
COL5A1P20908 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL5A1P20908 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.29■□□□□ 0.2
COL5A1P20908 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
COL5A1P20908 AC027307.3-201ENST00000594262 1100 ntBASIC16.29■□□□□ 0.2
COL5A1P20908 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.29■□□□□ 0.2
COL5A1P20908 AC022144.1-201ENST00000602255 1580 ntBASIC16.28■□□□□ 0.2
COL5A1P20908 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.28■□□□□ 0.2
COL5A1P20908 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.28■□□□□ 0.2
COL5A1P20908 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.28■□□□□ 0.2
COL5A1P20908 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
COL5A1P20908 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.28■□□□□ 0.2
COL5A1P20908 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.28■□□□□ 0.2
COL5A1P20908 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.28■□□□□ 0.2
COL5A1P20908 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL5A1P20908 COX5BP8-201ENST00000416911 349 ntBASIC16.28■□□□□ 0.2
COL5A1P20908 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.28■□□□□ 0.2
COL5A1P20908 AC007967.4-201ENST00000614700 386 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms