Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
NPHP1O15259 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.61■■□□□ 1.05
NPHP1O15259 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NPHP1O15259 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP1O15259 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.61■■□□□ 1.05
NPHP1O15259 SPDYE11-202ENST00000450699 704 ntBASIC21.61■■□□□ 1.05
NPHP1O15259 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.61■■□□□ 1.05
NPHP1O15259 SPDYE9P-201ENST00000570642 692 ntBASIC21.61■■□□□ 1.05
NPHP1O15259 MIR4745-201ENST00000577608 62 ntBASIC21.61■■□□□ 1.05
NPHP1O15259 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NPHP1O15259 AC005498.2-205ENST00000593218 784 ntBASIC21.61■■□□□ 1.05
NPHP1O15259 SPDYE10P-202ENST00000612005 668 ntBASIC21.61■■□□□ 1.05
NPHP1O15259 ACTL9-202ENST00000612068 1252 ntBASIC21.61■■□□□ 1.05
NPHP1O15259 SPDYE8P-202ENST00000612377 668 ntBASIC21.61■■□□□ 1.05
NPHP1O15259 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP1O15259 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP1O15259 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
NPHP1O15259 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
NPHP1O15259 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP1O15259 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.61■■□□□ 1.05
NPHP1O15259 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP1O15259 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.6■■□□□ 1.05
NPHP1O15259 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 AL135999.2-201ENST00000622438 1686 ntBASIC21.6■■□□□ 1.05
NPHP1O15259 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
NPHP1O15259 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.6■■□□□ 1.05
NPHP1O15259 AC093214.1-201ENST00000511688 1107 ntBASIC21.6■■□□□ 1.05
NPHP1O15259 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.6■■□□□ 1.05
NPHP1O15259 AC026120.1-201ENST00000611536 926 ntBASIC21.6■■□□□ 1.05
NPHP1O15259 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21.6■■□□□ 1.05
NPHP1O15259 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
NPHP1O15259 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NPHP1O15259 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.6■■□□□ 1.05
NPHP1O15259 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
NPHP1O15259 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP1O15259 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
NPHP1O15259 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
NPHP1O15259 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.59■■□□□ 1.05
NPHP1O15259 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.59■■□□□ 1.05
NPHP1O15259 AL671277.1-201ENST00000429656 993 ntBASIC21.59■■□□□ 1.05
NPHP1O15259 AC244107.1-201ENST00000442033 332 ntBASIC21.59■■□□□ 1.05
NPHP1O15259 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP1O15259 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP1O15259 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC21.59■■□□□ 1.05
NPHP1O15259 AC067863.1-201ENST00000494933 530 ntBASIC21.59■■□□□ 1.05
NPHP1O15259 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.59■■□□□ 1.05
NPHP1O15259 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP1O15259 LTB4R2-202ENST00000528054 3092 ntBASIC21.59■■□□□ 1.05
NPHP1O15259 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC21.59■■□□□ 1.05
NPHP1O15259 AC069262.1-201ENST00000539058 672 ntBASIC21.59■■□□□ 1.05
NPHP1O15259 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.59■■□□□ 1.05
NPHP1O15259 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.59■■□□□ 1.05
NPHP1O15259 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
NPHP1O15259 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
NPHP1O15259 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP1O15259 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
NPHP1O15259 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP1O15259 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
NPHP1O15259 AC129492.6-201ENST00000611383 1305 ntBASIC21.58■■□□□ 1.05
NPHP1O15259 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP1O15259 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.58■■□□□ 1.05
NPHP1O15259 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.05
NPHP1O15259 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
NPHP1O15259 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
NPHP1O15259 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP1O15259 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP1O15259 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP1O15259 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP1O15259 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP1O15259 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP1O15259 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP1O15259 AL627223.1-201ENST00000416693 442 ntBASIC21.58■■□□□ 1.05
NPHP1O15259 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.58■■□□□ 1.05
NPHP1O15259 FAM86C2P-203ENST00000528684 1004 ntBASIC21.58■■□□□ 1.05
NPHP1O15259 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.58■■□□□ 1.05
NPHP1O15259 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms