Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SIX4Q9UIU6 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.33■□□□□ 0.53
SIX4Q9UIU6 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.33■□□□□ 0.53
SIX4Q9UIU6 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SIX4Q9UIU6 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 AL591424.1-201ENST00000442569 1213 ntBASIC18.33■□□□□ 0.52
SIX4Q9UIU6 KRT18P3-201ENST00000451602 1288 ntBASIC18.33■□□□□ 0.52
SIX4Q9UIU6 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 AC060834.1-201ENST00000443027 2032 ntBASIC18.33■□□□□ 0.52
SIX4Q9UIU6 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SIX4Q9UIU6 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 AC092068.3-201ENST00000587894 2016 ntBASIC18.32■□□□□ 0.52
SIX4Q9UIU6 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 ACTL9-202ENST00000612068 1252 ntBASIC18.32■□□□□ 0.52
SIX4Q9UIU6 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 AC010507.1-201ENST00000633895 436 ntBASIC18.32■□□□□ 0.52
SIX4Q9UIU6 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SIX4Q9UIU6 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 FAM185BP-201ENST00000443595 716 ntBASIC18.31■□□□□ 0.52
SIX4Q9UIU6 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 AC018845.2-201ENST00000568326 409 ntBASIC18.31■□□□□ 0.52
SIX4Q9UIU6 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX4Q9UIU6 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX4Q9UIU6 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX4Q9UIU6 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX4Q9UIU6 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX4Q9UIU6 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.3■□□□□ 0.52
SIX4Q9UIU6 AC012313.1-201ENST00000593393 3059 ntBASIC18.3■□□□□ 0.52
SIX4Q9UIU6 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX4Q9UIU6 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX4Q9UIU6 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms