Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC009093.7-201ENST00000623853 1223 ntBASIC17.93■□□□□ 0.46
LIMD1Q9UGP4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMD1Q9UGP4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMD1Q9UGP4 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMD1Q9UGP4 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMD1Q9UGP4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMD1Q9UGP4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMD1Q9UGP4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AL671277.1-201ENST00000429656 993 ntBASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AC015911.4-201ENST00000588022 1070 ntBASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AC026120.1-201ENST00000611536 926 ntBASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AC116407.2-201ENST00000613639 860 ntBASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 BX276092.7-203ENST00000637198 1536 ntBASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 NOC2LP2-201ENST00000407594 1944 ntBASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMD1Q9UGP4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 LTB4R2-202ENST00000528054 3092 ntBASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 AC002056.1-201ENST00000395613 760 ntBASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 AC055876.3-201ENST00000431496 288 ntBASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 AC138649.4-201ENST00000612222 287 ntBASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMD1Q9UGP4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 OR6D1P-202ENST00000641007 5290 ntBASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 AC236430.1-201ENST00000402231 743 ntBASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 BASP1P1-201ENST00000430708 665 ntBASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 ADH5P3-201ENST00000433842 1137 ntBASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 AC017007.3-201ENST00000479865 435 ntBASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.9■□□□□ 0.46
LIMD1Q9UGP4 KRT8P48-201ENST00000515599 1220 ntBASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms