Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 TERC-201ENST00000602385 541 ntBASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 TUBB8P12-201ENST00000308911 1335 ntBASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 TUBB7P-202ENST00000428444 1305 ntBASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 TUBB8P7-204ENST00000567960 1332 ntBASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCSER1Q9C0I3 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 AC243591.1-201ENST00000452967 1364 ntBASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.21■□□□□ 0.67
CCSER1Q9C0I3 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
CCSER1Q9C0I3 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 AC138932.1-201ENST00000534164 6830 ntBASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 PAWRP1-201ENST00000451083 565 ntBASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 EMBP1-201ENST00000458200 901 ntBASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 AC107918.4-202ENST00000641623 219 ntBASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 AC078925.2-201ENST00000624013 1973 ntBASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.2■□□□□ 0.66
CCSER1Q9C0I3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CCSER1Q9C0I3 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CCSER1Q9C0I3 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.19■□□□□ 0.66
CCSER1Q9C0I3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.19■□□□□ 0.66
CCSER1Q9C0I3 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCSER1Q9C0I3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCSER1Q9C0I3 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms