Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 UNC93B6-202ENST00000528242 690 ntBASIC5.34□□□□□ -1.55
SYNE1Q8NF91 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 TMED1-207ENST00000591695 809 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 METTL21AP1-201ENST00000438852 635 ntBASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 ZNF259P1-201ENST00000407656 1365 ntBASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 SOD2-201ENST00000337404 991 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 INIP-202ENST00000374236 874 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AC004832.2-201ENST00000426397 482 ntBASIC5.34□□□□□ -1.55
SYNE1Q8NF91 PRYP5-201ENST00000451909 266 ntBASIC5.34□□□□□ -1.55
SYNE1Q8NF91 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 FUK-207ENST00000571514 3054 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AL591424.1-201ENST00000442569 1213 ntBASIC5.34□□□□□ -1.55
SYNE1Q8NF91 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 AC100803.2-201ENST00000562459 1963 ntBASIC5.34□□□□□ -1.55
SYNE1Q8NF91 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC5.34□□□□□ -1.55
SYNE1Q8NF91 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 AD001527.2-201ENST00000622994 785 ntBASIC5.34□□□□□ -1.56
SYNE1Q8NF91 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms