Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LIM2P55344 NCF1C-201ENST00000438382 1427 ntBASIC16.35■□□□□ 0.21
LIM2P55344 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LIM2P55344 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LIM2P55344 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.35■□□□□ 0.21
LIM2P55344 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LIM2P55344 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.35■□□□□ 0.21
LIM2P55344 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.34■□□□□ 0.21
LIM2P55344 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
LIM2P55344 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LIM2P55344 AP002469.2-201ENST00000531724 424 ntBASIC16.34■□□□□ 0.21
LIM2P55344 AL160237.2-201ENST00000556165 472 ntBASIC16.34■□□□□ 0.21
LIM2P55344 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.34■□□□□ 0.21
LIM2P55344 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.34■□□□□ 0.21
LIM2P55344 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.34■□□□□ 0.21
LIM2P55344 AL589182.2-201ENST00000619332 1049 ntBASIC16.34■□□□□ 0.21
LIM2P55344 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
LIM2P55344 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.34■□□□□ 0.21
LIM2P55344 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
LIM2P55344 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
LIM2P55344 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIM2P55344 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIM2P55344 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.33■□□□□ 0.21
LIM2P55344 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIM2P55344 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIM2P55344 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
LIM2P55344 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.33■□□□□ 0.2
LIM2P55344 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.33■□□□□ 0.2
LIM2P55344 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.33■□□□□ 0.2
LIM2P55344 AF186996.4-201ENST00000467186 377 ntBASIC16.33■□□□□ 0.2
LIM2P55344 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.33■□□□□ 0.2
LIM2P55344 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
LIM2P55344 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.33■□□□□ 0.2
LIM2P55344 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.33■□□□□ 0.2
LIM2P55344 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.33■□□□□ 0.2
LIM2P55344 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.33■□□□□ 0.2
LIM2P55344 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
LIM2P55344 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
LIM2P55344 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.33■□□□□ 0.2
LIM2P55344 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LIM2P55344 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.33■□□□□ 0.2
LIM2P55344 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.33■□□□□ 0.2
LIM2P55344 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIM2P55344 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
LIM2P55344 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.32■□□□□ 0.2
LIM2P55344 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LIM2P55344 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 KRT18P67-201ENST00000432816 1264 ntBASIC16.32■□□□□ 0.2
LIM2P55344 RPS2P1-201ENST00000434010 821 ntBASIC16.32■□□□□ 0.2
LIM2P55344 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 AC018712.1-201ENST00000455767 687 ntBASIC16.32■□□□□ 0.2
LIM2P55344 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIM2P55344 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LIM2P55344 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.32■□□□□ 0.2
LIM2P55344 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.32■□□□□ 0.2
LIM2P55344 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms