Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTCFP49711 AC093677.2-201ENST00000600169 1863 ntBASIC19.82■□□□□ 0.76
CTCFP49711 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.82■□□□□ 0.76
CTCFP49711 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTCFP49711 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTCFP49711 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CTCFP49711 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.82■□□□□ 0.76
CTCFP49711 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTCFP49711 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC19.82■□□□□ 0.76
CTCFP49711 AC234783.1-201ENST00000441761 496 ntBASIC19.82■□□□□ 0.76
CTCFP49711 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTCFP49711 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.82■□□□□ 0.76
CTCFP49711 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.82■□□□□ 0.76
CTCFP49711 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.82■□□□□ 0.76
CTCFP49711 MIR6869-201ENST00000619434 62 ntBASIC19.82■□□□□ 0.76
CTCFP49711 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.82■□□□□ 0.76
CTCFP49711 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTCFP49711 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTCFP49711 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CTCFP49711 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CTCFP49711 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CTCFP49711 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CTCFP49711 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CTCFP49711 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.81■□□□□ 0.76
CTCFP49711 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC19.81■□□□□ 0.76
CTCFP49711 AC087499.6-201ENST00000411576 835 ntBASIC19.81■□□□□ 0.76
CTCFP49711 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC19.81■□□□□ 0.76
CTCFP49711 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC19.81■□□□□ 0.76
CTCFP49711 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC19.81■□□□□ 0.76
CTCFP49711 STOM-203ENST00000538954 1257 ntTSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 USB1-203ENST00000539737 1212 ntTSL 2 BASIC19.81■□□□□ 0.76
CTCFP49711 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC19.81■□□□□ 0.76
CTCFP49711 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC19.81■□□□□ 0.76
CTCFP49711 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC19.81■□□□□ 0.76
CTCFP49711 MIR6727-201ENST00000620702 65 ntBASIC19.81■□□□□ 0.76
CTCFP49711 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.81■□□□□ 0.76
CTCFP49711 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.81■□□□□ 0.76
CTCFP49711 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 AL138781.2-201ENST00000617896 1843 ntBASIC19.81■□□□□ 0.76
CTCFP49711 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.81■□□□□ 0.76
CTCFP49711 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CTCFP49711 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
CTCFP49711 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CTCFP49711 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC19.8■□□□□ 0.76
CTCFP49711 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CTCFP49711 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.8■□□□□ 0.76
CTCFP49711 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 CD81-202ENST00000381036 880 ntTSL 3 BASIC19.8■□□□□ 0.76
CTCFP49711 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC19.8■□□□□ 0.76
CTCFP49711 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC19.8■□□□□ 0.76
CTCFP49711 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CTCFP49711 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC19.8■□□□□ 0.76
CTCFP49711 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CTCFP49711 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.8■□□□□ 0.76
CTCFP49711 SPDYE12P-201ENST00000618416 771 ntBASIC19.8■□□□□ 0.76
CTCFP49711 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CTCFP49711 AC020907.1-201ENST00000616460 1350 ntBASIC19.8■□□□□ 0.76
CTCFP49711 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CTCFP49711 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.8■□□□□ 0.76
CTCFP49711 LTB4R2-202ENST00000528054 3092 ntBASIC19.79■□□□□ 0.76
CTCFP49711 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CTCFP49711 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.79■□□□□ 0.76
CTCFP49711 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.79■□□□□ 0.76
CTCFP49711 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.79■□□□□ 0.76
CTCFP49711 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.79■□□□□ 0.76
CTCFP49711 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CTCFP49711 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.79■□□□□ 0.76
CTCFP49711 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CTCFP49711 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CTCFP49711 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms