Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 AC010327.4-202ENST00000591484 748 ntBASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
TMX2-CTNND1H3BSU7 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
TMX2-CTNND1H3BSU7 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.96■□□□□ 0.3
TMX2-CTNND1H3BSU7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TMX2-CTNND1H3BSU7 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TMX2-CTNND1H3BSU7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.96■□□□□ 0.3
TMX2-CTNND1H3BSU7 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 AL596257.1-201ENST00000641463 2694 ntBASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 KRT18P27-201ENST00000427733 1299 ntBASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TMX2-CTNND1H3BSU7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 SPDYE21P-201ENST00000413323 827 ntBASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 AL020989.1-201ENST00000422979 469 ntBASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC112482.1-201ENST00000492080 688 ntBASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 AC132938.6-201ENST00000623828 1655 ntBASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.94■□□□□ 0.3
TMX2-CTNND1H3BSU7 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.93■□□□□ 0.3
TMX2-CTNND1H3BSU7 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms