Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sox3P53784 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.86■□□□□ 0.93
Sox3P53784 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Sox3P53784 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sox3P53784 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Sox3P53784 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Sox3P53784 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Sox3P53784 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Sox3P53784 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.85■□□□□ 0.93
Sox3P53784 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Sox3P53784 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Sox3P53784 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Sox3P53784 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Sox3P53784 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Sox3P53784 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Sox3P53784 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Sox3P53784 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Sox3P53784 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Sox3P53784 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Sox3P53784 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Sox3P53784 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.83■□□□□ 0.93
Sox3P53784 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.83■□□□□ 0.93
Sox3P53784 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sox3P53784 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Sox3P53784 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.82■□□□□ 0.92
Sox3P53784 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Sox3P53784 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Sox3P53784 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sox3P53784 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sox3P53784 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sox3P53784 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC20.81■□□□□ 0.92
Sox3P53784 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sox3P53784 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.8■□□□□ 0.92
Sox3P53784 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sox3P53784 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Sox3P53784 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sox3P53784 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Sox3P53784 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sox3P53784 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.8■□□□□ 0.92
Sox3P53784 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Sox3P53784 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 Gm44428-201ENSMUST00000204474 874 ntBASIC20.79■□□□□ 0.92
Sox3P53784 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Sox3P53784 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sox3P53784 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sox3P53784 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sox3P53784 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sox3P53784 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sox3P53784 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Sox3P53784 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sox3P53784 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sox3P53784 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Sox3P53784 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Sox3P53784 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Sox3P53784 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Sox3P53784 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Sox3P53784 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Sox3P53784 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Sox3P53784 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Sox3P53784 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sox3P53784 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.76■□□□□ 0.91
Sox3P53784 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sox3P53784 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Sox3P53784 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Sox3P53784 Gm5297-201ENSMUST00000198555 1171 ntBASIC20.76■□□□□ 0.91
Sox3P53784 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sox3P53784 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC20.76■□□□□ 0.91
Sox3P53784 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sox3P53784 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sox3P53784 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sox3P53784 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sox3P53784 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sox3P53784 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sox3P53784 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sox3P53784 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sox3P53784 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sox3P53784 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
Sox3P53784 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Sox3P53784 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.74■□□□□ 0.91
Sox3P53784 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sox3P53784 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Sox3P53784 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sox3P53784 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sox3P53784 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sox3P53784 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sox3P53784 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sox3P53784 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Sox3P53784 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Sox3P53784 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sox3P53784 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sox3P53784 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.72■□□□□ 0.91
Sox3P53784 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms