Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM54Q9BYV2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM54Q9BYV2 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM54Q9BYV2 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM54Q9BYV2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM54Q9BYV2 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 TNRC18P3-201ENST00000441896 2691 ntBASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 AC003669.1-201ENST00000334569 611 ntBASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 STK25P1-201ENST00000585406 838 ntBASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 BNIP3P18-201ENST00000593976 575 ntBASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 INTS4P1-201ENST00000438455 1935 ntBASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM54Q9BYV2 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 AC099336.1-202ENST00000602961 463 ntBASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 AC114341.1-201ENST00000618070 349 ntBASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 AL118508.1-201ENST00000613502 2345 ntBASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
TRIM54Q9BYV2 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM54Q9BYV2 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms