Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 AC002056.1-201ENST00000395613 760 ntBASIC17.46■□□□□ 0.39
CHFRQ96EP1 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.46■□□□□ 0.39
CHFRQ96EP1 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHFRQ96EP1 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.46■□□□□ 0.38
CHFRQ96EP1 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 AL671277.1-201ENST00000429656 993 ntBASIC17.45■□□□□ 0.38
CHFRQ96EP1 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 AC243562.1-201ENST00000560672 389 ntBASIC17.45■□□□□ 0.38
CHFRQ96EP1 AC025678.2-201ENST00000562061 970 ntBASIC17.45■□□□□ 0.38
CHFRQ96EP1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CHFRQ96EP1 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHFRQ96EP1 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.44■□□□□ 0.38
CHFRQ96EP1 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 FAM58DP-201ENST00000428076 619 ntBASIC17.44■□□□□ 0.38
CHFRQ96EP1 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 AC015911.4-201ENST00000588022 1070 ntBASIC17.44■□□□□ 0.38
CHFRQ96EP1 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 AL645728.2-201ENST00000641974 660 ntBASIC17.44■□□□□ 0.38
CHFRQ96EP1 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHFRQ96EP1 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.44■□□□□ 0.38
CHFRQ96EP1 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CHFRQ96EP1 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHFRQ96EP1 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms