Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.1■□□□□ 0.49
APOEP02649 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.1■□□□□ 0.49
APOEP02649 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.1■□□□□ 0.49
APOEP02649 PRYP5-201ENST00000451909 266 ntBASIC18.1■□□□□ 0.49
APOEP02649 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
APOEP02649 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
APOEP02649 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.1■□□□□ 0.49
APOEP02649 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.1■□□□□ 0.49
APOEP02649 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.1■□□□□ 0.49
APOEP02649 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.1■□□□□ 0.49
APOEP02649 AC106820.2-201ENST00000563775 3264 ntBASIC18.1■□□□□ 0.49
APOEP02649 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
APOEP02649 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.1■□□□□ 0.49
APOEP02649 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
APOEP02649 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
APOEP02649 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
APOEP02649 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.09■□□□□ 0.49
APOEP02649 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.09■□□□□ 0.49
APOEP02649 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
APOEP02649 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.09■□□□□ 0.49
APOEP02649 AC018712.1-201ENST00000455767 687 ntBASIC18.09■□□□□ 0.49
APOEP02649 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.09■□□□□ 0.49
APOEP02649 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.09■□□□□ 0.49
APOEP02649 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
APOEP02649 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 AC004817.3-201ENST00000602957 2129 ntBASIC18.09■□□□□ 0.49
APOEP02649 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
APOEP02649 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
APOEP02649 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
APOEP02649 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
APOEP02649 PCDHA12-202ENST00000613593 2588 ntBASIC18.09■□□□□ 0.49
APOEP02649 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.09■□□□□ 0.49
APOEP02649 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOEP02649 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
APOEP02649 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
APOEP02649 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.08■□□□□ 0.49
APOEP02649 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
APOEP02649 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
APOEP02649 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
APOEP02649 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
APOEP02649 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.08■□□□□ 0.49
APOEP02649 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
APOEP02649 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
APOEP02649 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
APOEP02649 RPS2P28-201ENST00000314255 741 ntBASIC18.08■□□□□ 0.48
APOEP02649 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
APOEP02649 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.08■□□□□ 0.48
APOEP02649 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
APOEP02649 MRPL3P1-201ENST00000400109 1033 ntBASIC18.08■□□□□ 0.48
APOEP02649 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
APOEP02649 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
APOEP02649 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.08■□□□□ 0.48
APOEP02649 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.08■□□□□ 0.48
APOEP02649 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.08■□□□□ 0.48
APOEP02649 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
APOEP02649 SLC25A6P4-201ENST00000586535 553 ntBASIC18.08■□□□□ 0.48
APOEP02649 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.08■□□□□ 0.48
APOEP02649 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.08■□□□□ 0.48
APOEP02649 AC025062.2-201ENST00000605477 670 ntBASIC18.08■□□□□ 0.48
APOEP02649 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.08■□□□□ 0.48
APOEP02649 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
APOEP02649 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.08■□□□□ 0.48
APOEP02649 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.08■□□□□ 0.48
APOEP02649 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
APOEP02649 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
APOEP02649 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.08■□□□□ 0.48
APOEP02649 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
APOEP02649 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
APOEP02649 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
APOEP02649 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.07■□□□□ 0.48
APOEP02649 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
APOEP02649 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
APOEP02649 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
APOEP02649 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
APOEP02649 LYSMD4-203ENST00000378904 2122 ntBASIC18.07■□□□□ 0.48
APOEP02649 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms