Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
RNF40O75150 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
RNF40O75150 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RNF40O75150 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF40O75150 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF40O75150 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.67■□□□□ 0.58
RNF40O75150 AF238378.1-201ENST00000526806 358 ntBASIC18.67■□□□□ 0.58
RNF40O75150 AC011840.4-201ENST00000578471 627 ntBASIC18.67■□□□□ 0.58
RNF40O75150 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
RNF40O75150 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 PCDHA1-201ENST00000378133 2726 ntBASIC18.67■□□□□ 0.58
RNF40O75150 GMCL1P1-201ENST00000463439 1581 ntBASIC18.67■□□□□ 0.58
RNF40O75150 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.67■□□□□ 0.58
RNF40O75150 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF40O75150 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF40O75150 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF40O75150 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF40O75150 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.66■□□□□ 0.58
RNF40O75150 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF40O75150 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
RNF40O75150 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
RNF40O75150 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RNF40O75150 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.66■□□□□ 0.58
RNF40O75150 AC006538.3-201ENST00000612495 578 ntBASIC18.66■□□□□ 0.58
RNF40O75150 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 LINC02199-201ENST00000506655 2702 ntBASIC18.66■□□□□ 0.58
RNF40O75150 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF40O75150 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF40O75150 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.66■□□□□ 0.58
RNF40O75150 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
RNF40O75150 KRT8P50-201ENST00000562022 1438 ntBASIC18.66■□□□□ 0.58
RNF40O75150 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.65■□□□□ 0.58
RNF40O75150 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RNF40O75150 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.65■□□□□ 0.58
RNF40O75150 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.65■□□□□ 0.58
RNF40O75150 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
RNF40O75150 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.65■□□□□ 0.58
RNF40O75150 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
RNF40O75150 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.65■□□□□ 0.58
RNF40O75150 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.65■□□□□ 0.58
RNF40O75150 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.65■□□□□ 0.58
RNF40O75150 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.65■□□□□ 0.58
RNF40O75150 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.65■□□□□ 0.58
RNF40O75150 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.65■□□□□ 0.58
RNF40O75150 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.65■□□□□ 0.58
RNF40O75150 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RNF40O75150 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.65■□□□□ 0.58
RNF40O75150 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF40O75150 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms