Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.4■□□□□ 0.22
PROM1O43490 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
PROM1O43490 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PROM1O43490 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.4■□□□□ 0.22
PROM1O43490 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.4■□□□□ 0.22
PROM1O43490 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
PROM1O43490 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.4■□□□□ 0.22
PROM1O43490 AC093525.9-201ENST00000624961 1746 ntBASIC16.4■□□□□ 0.22
PROM1O43490 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.4■□□□□ 0.22
PROM1O43490 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.4■□□□□ 0.22
PROM1O43490 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.4■□□□□ 0.22
PROM1O43490 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
PROM1O43490 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.4■□□□□ 0.22
PROM1O43490 MTDHP3-201ENST00000594186 672 ntBASIC16.4■□□□□ 0.22
PROM1O43490 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PROM1O43490 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 AL355877.3-201ENST00000622820 899 ntBASIC16.4■□□□□ 0.22
PROM1O43490 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.4■□□□□ 0.22
PROM1O43490 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PROM1O43490 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 AP001094.4-201ENST00000579008 2176 ntBASIC16.4■□□□□ 0.22
PROM1O43490 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PROM1O43490 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.4■□□□□ 0.22
PROM1O43490 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PROM1O43490 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PROM1O43490 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.39■□□□□ 0.21
PROM1O43490 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.39■□□□□ 0.21
PROM1O43490 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.39■□□□□ 0.21
PROM1O43490 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
PROM1O43490 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.39■□□□□ 0.21
PROM1O43490 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 SLC25A1P3-201ENST00000395415 828 ntBASIC16.39■□□□□ 0.21
PROM1O43490 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
PROM1O43490 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.39■□□□□ 0.21
PROM1O43490 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.39■□□□□ 0.21
PROM1O43490 PRYP5-201ENST00000451909 266 ntBASIC16.39■□□□□ 0.21
PROM1O43490 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.39■□□□□ 0.21
PROM1O43490 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.39■□□□□ 0.21
PROM1O43490 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.39■□□□□ 0.21
PROM1O43490 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.39■□□□□ 0.21
PROM1O43490 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PROM1O43490 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.39■□□□□ 0.21
PROM1O43490 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PROM1O43490 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PROM1O43490 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PROM1O43490 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.38■□□□□ 0.21
PROM1O43490 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 AL139384.1-201ENST00000612143 3047 ntBASIC16.38■□□□□ 0.21
PROM1O43490 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
PROM1O43490 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PROM1O43490 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.38■□□□□ 0.21
PROM1O43490 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.38■□□□□ 0.21
PROM1O43490 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.38■□□□□ 0.21
PROM1O43490 UNC93B7-201ENST00000509439 705 ntBASIC16.38■□□□□ 0.21
PROM1O43490 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.38■□□□□ 0.21
PROM1O43490 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.38■□□□□ 0.21
PROM1O43490 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.38■□□□□ 0.21
PROM1O43490 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PROM1O43490 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PROM1O43490 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.38■□□□□ 0.21
PROM1O43490 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.38■□□□□ 0.21
PROM1O43490 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms