Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM3Q53GG5 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 LINC00167-201ENST00000530583 1419 ntBASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 AC124067.4-201ENST00000519691 2379 ntBASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PDLIM3Q53GG5 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 FOSL1P1-201ENST00000511041 816 ntBASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 POLD2P1-201ENST00000511220 997 ntBASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 MIR3197-201ENST00000582241 73 ntBASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 AC064862.7-201ENST00000604520 867 ntBASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 AC116407.2-201ENST00000613639 860 ntBASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.37□□□□□ -0.11
PDLIM3Q53GG5 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms