Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.3■□□□□ 0.2
SOX3P41225 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 MTDHP3-201ENST00000594186 672 ntBASIC16.3■□□□□ 0.2
SOX3P41225 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.3■□□□□ 0.2
SOX3P41225 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 AL355877.3-201ENST00000622820 899 ntBASIC16.3■□□□□ 0.2
SOX3P41225 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SOX3P41225 TP73-AS1-207ENST00000624167 988 ntBASIC16.3■□□□□ 0.2
SOX3P41225 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX3P41225 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX3P41225 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
SOX3P41225 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX3P41225 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SOX3P41225 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX3P41225 KRT18P55-202ENST00000578578 1546 ntBASIC16.29■□□□□ 0.2
SOX3P41225 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SOX3P41225 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
SOX3P41225 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 COX5BP2-201ENST00000392354 334 ntBASIC16.29■□□□□ 0.2
SOX3P41225 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.29■□□□□ 0.2
SOX3P41225 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 AC122714.2-201ENST00000502787 707 ntBASIC16.29■□□□□ 0.2
SOX3P41225 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.29■□□□□ 0.2
SOX3P41225 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.29■□□□□ 0.2
SOX3P41225 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.29■□□□□ 0.2
SOX3P41225 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.29■□□□□ 0.2
SOX3P41225 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX3P41225 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.29■□□□□ 0.2
SOX3P41225 AP005117.1-201ENST00000584346 1413 ntBASIC16.28■□□□□ 0.2
SOX3P41225 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SOX3P41225 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 AL139384.1-201ENST00000612143 3047 ntBASIC16.28■□□□□ 0.2
SOX3P41225 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.28■□□□□ 0.2
SOX3P41225 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SOX3P41225 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
SOX3P41225 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.28■□□□□ 0.2
SOX3P41225 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.28■□□□□ 0.2
SOX3P41225 FDX1P1-201ENST00000449115 551 ntBASIC16.28■□□□□ 0.2
SOX3P41225 FGFR3P6-201ENST00000457012 610 ntBASIC16.28■□□□□ 0.2
SOX3P41225 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.28■□□□□ 0.2
SOX3P41225 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.28■□□□□ 0.2
SOX3P41225 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.28■□□□□ 0.2
SOX3P41225 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SOX3P41225 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.28■□□□□ 0.2
SOX3P41225 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.28■□□□□ 0.2
SOX3P41225 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SOX3P41225 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.28■□□□□ 0.2
SOX3P41225 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.28■□□□□ 0.2
SOX3P41225 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX3P41225 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SOX3P41225 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX3P41225 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX3P41225 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX3P41225 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX3P41225 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SOX3P41225 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms