Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGA1P17096 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
HMGA1P17096 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGA1P17096 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 HMGA1P7-201ENST00000406908 502 ntBASIC17.79■□□□□ 0.44
HMGA1P17096 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.79■□□□□ 0.44
HMGA1P17096 AP000344.2-201ENST00000512987 629 ntBASIC17.79■□□□□ 0.44
HMGA1P17096 AC112191.1-201ENST00000523689 701 ntBASIC17.79■□□□□ 0.44
HMGA1P17096 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGA1P17096 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGA1P17096 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.79■□□□□ 0.44
HMGA1P17096 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGA1P17096 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.79■□□□□ 0.44
HMGA1P17096 AC099522.2-201ENST00000607001 744 ntBASIC17.79■□□□□ 0.44
HMGA1P17096 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGA1P17096 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGA1P17096 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGA1P17096 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGA1P17096 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGA1P17096 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGA1P17096 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HMGA1P17096 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HMGA1P17096 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
HMGA1P17096 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HMGA1P17096 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGA1P17096 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
HMGA1P17096 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
HMGA1P17096 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
HMGA1P17096 AC004461.1-201ENST00000412461 403 ntBASIC17.78■□□□□ 0.44
HMGA1P17096 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HMGA1P17096 DUX4L17-201ENST00000557360 1267 ntBASIC17.78■□□□□ 0.44
HMGA1P17096 AC005412.3-201ENST00000580309 715 ntBASIC17.78■□□□□ 0.44
HMGA1P17096 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGA1P17096 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.78■□□□□ 0.44
HMGA1P17096 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HMGA1P17096 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGA1P17096 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HMGA1P17096 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HMGA1P17096 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGA1P17096 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGA1P17096 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGA1P17096 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGA1P17096 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGA1P17096 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGA1P17096 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGA1P17096 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGA1P17096 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.77■□□□□ 0.44
HMGA1P17096 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGA1P17096 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGA1P17096 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 AC002056.1-201ENST00000395613 760 ntBASIC17.77■□□□□ 0.44
HMGA1P17096 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.77■□□□□ 0.44
HMGA1P17096 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.77■□□□□ 0.44
HMGA1P17096 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.77■□□□□ 0.44
HMGA1P17096 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.77■□□□□ 0.44
HMGA1P17096 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
HMGA1P17096 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.77■□□□□ 0.44
HMGA1P17096 AC022145.2-201ENST00000598203 171 ntBASIC17.77■□□□□ 0.44
HMGA1P17096 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGA1P17096 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGA1P17096 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGA1P17096 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGA1P17096 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGA1P17096 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HMGA1P17096 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HMGA1P17096 AC068880.1-201ENST00000507289 2297 ntBASIC17.77■□□□□ 0.43
HMGA1P17096 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
HMGA1P17096 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGA1P17096 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGA1P17096 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGA1P17096 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms