Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CCDC140Q96MF4 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC140Q96MF4 AC092053.1-201ENST00000605787 1936 ntBASIC13.39□□□□□ -0.27
CCDC140Q96MF4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC13.39□□□□□ -0.27
CCDC140Q96MF4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC140Q96MF4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC140Q96MF4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.38□□□□□ -0.27
CCDC140Q96MF4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 UNC93B7-201ENST00000509439 705 ntBASIC13.38□□□□□ -0.27
CCDC140Q96MF4 SART3-203ENST00000546611 1184 ntBASIC13.38□□□□□ -0.27
CCDC140Q96MF4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 NKAPP1-205ENST00000585790 367 ntBASIC13.38□□□□□ -0.27
CCDC140Q96MF4 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 AL022326.1-202ENST00000641533 845 ntBASIC13.38□□□□□ -0.27
CCDC140Q96MF4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CCDC140Q96MF4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 LINC00982-205ENST00000420957 435 ntBASIC13.37□□□□□ -0.27
CCDC140Q96MF4 PRYP5-201ENST00000451909 266 ntBASIC13.37□□□□□ -0.27
CCDC140Q96MF4 AF238378.1-201ENST00000526806 358 ntBASIC13.37□□□□□ -0.27
CCDC140Q96MF4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC140Q96MF4 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC140Q96MF4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms