Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC044860.1-202ENST00000559481 777 ntBASIC17.3■□□□□ 0.36
TTC28Q96AY4 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TTC28Q96AY4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TTC28Q96AY4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 CETN4P-206ENST00000642099 2168 ntBASIC17.29■□□□□ 0.36
TTC28Q96AY4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 MEP1AP4-201ENST00000423244 1087 ntBASIC17.29■□□□□ 0.36
TTC28Q96AY4 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.29■□□□□ 0.36
TTC28Q96AY4 STK19B-204ENST00000512515 211 ntBASIC17.29■□□□□ 0.36
TTC28Q96AY4 MIR7845-201ENST00000618396 99 ntBASIC17.29■□□□□ 0.36
TTC28Q96AY4 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 AL157384.1-201ENST00000445995 2473 ntBASIC17.29■□□□□ 0.36
TTC28Q96AY4 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TTC28Q96AY4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 KLF2P4-201ENST00000451959 1225 ntBASIC17.28■□□□□ 0.36
TTC28Q96AY4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TTC28Q96AY4 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TTC28Q96AY4 LINC01006-201ENST00000333319 2292 ntBASIC17.28■□□□□ 0.36
TTC28Q96AY4 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TTC28Q96AY4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TTC28Q96AY4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TTC28Q96AY4 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TTC28Q96AY4 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TTC28Q96AY4 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TTC28Q96AY4 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 RN7SL618P-201ENST00000477850 296 ntBASIC17.28■□□□□ 0.36
TTC28Q96AY4 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 GMCL1P1-201ENST00000463439 1581 ntBASIC17.28■□□□□ 0.36
TTC28Q96AY4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
TTC28Q96AY4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TTC28Q96AY4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TTC28Q96AY4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.27■□□□□ 0.36
TTC28Q96AY4 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TTC28Q96AY4 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.27■□□□□ 0.36
TTC28Q96AY4 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TTC28Q96AY4 AC105233.2-201ENST00000523697 349 ntBASIC17.27■□□□□ 0.36
TTC28Q96AY4 AF228730.5-201ENST00000530288 346 ntBASIC17.27■□□□□ 0.36
TTC28Q96AY4 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TTC28Q96AY4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.27■□□□□ 0.36
TTC28Q96AY4 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TTC28Q96AY4 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC17.27■□□□□ 0.36
TTC28Q96AY4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TTC28Q96AY4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.27■□□□□ 0.36
TTC28Q96AY4 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TTC28Q96AY4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms