Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 AL353135.1-201ENST00000606729 504 ntBASIC16.9■□□□□ 0.3
VRK3Q8IV63 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 AC060834.1-201ENST00000443027 2032 ntBASIC16.9■□□□□ 0.3
VRK3Q8IV63 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VRK3Q8IV63 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VRK3Q8IV63 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.89■□□□□ 0.3
VRK3Q8IV63 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.3
VRK3Q8IV63 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VRK3Q8IV63 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 NCF1C-201ENST00000438382 1427 ntBASIC16.89■□□□□ 0.29
VRK3Q8IV63 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 AC022211.2-201ENST00000585075 2527 ntBASIC16.89■□□□□ 0.29
VRK3Q8IV63 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 AL160237.2-201ENST00000556165 472 ntBASIC16.89■□□□□ 0.29
VRK3Q8IV63 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 AL589182.2-201ENST00000619332 1049 ntBASIC16.89■□□□□ 0.29
VRK3Q8IV63 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VRK3Q8IV63 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.89■□□□□ 0.29
VRK3Q8IV63 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 MRPL3P1-201ENST00000400109 1033 ntBASIC16.88■□□□□ 0.29
VRK3Q8IV63 KRT18P67-201ENST00000432816 1264 ntBASIC16.88■□□□□ 0.29
VRK3Q8IV63 AC009078.2-202ENST00000463353 338 ntBASIC16.88■□□□□ 0.29
VRK3Q8IV63 AC073648.2-201ENST00000510116 352 ntBASIC16.88■□□□□ 0.29
VRK3Q8IV63 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 AC107918.4-202ENST00000641623 219 ntBASIC16.88■□□□□ 0.29
VRK3Q8IV63 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 AL590787.1-201ENST00000568856 1315 ntBASIC16.88■□□□□ 0.29
VRK3Q8IV63 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VRK3Q8IV63 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VRK3Q8IV63 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
VRK3Q8IV63 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.87■□□□□ 0.29
VRK3Q8IV63 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.87■□□□□ 0.29
VRK3Q8IV63 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VRK3Q8IV63 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
VRK3Q8IV63 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms