Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL6A3P12111 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 AFG3L1P-217ENST00000557444 2447 ntBASIC17.78■□□□□ 0.44
COL6A3P12111 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.78■□□□□ 0.44
COL6A3P12111 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
COL6A3P12111 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL6A3P12111 AC023310.3-201ENST00000557027 670 ntBASIC17.78■□□□□ 0.44
COL6A3P12111 AC100756.1-201ENST00000562736 682 ntBASIC17.78■□□□□ 0.44
COL6A3P12111 RARRES2P9-201ENST00000565168 469 ntBASIC17.78■□□□□ 0.44
COL6A3P12111 AC138749.3-201ENST00000567691 622 ntBASIC17.78■□□□□ 0.44
COL6A3P12111 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 AC116165.1-201ENST00000611806 668 ntBASIC17.78■□□□□ 0.44
COL6A3P12111 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.78■□□□□ 0.44
COL6A3P12111 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC17.78■□□□□ 0.44
COL6A3P12111 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A3P12111 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A3P12111 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A3P12111 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
COL6A3P12111 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.77■□□□□ 0.44
COL6A3P12111 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.77■□□□□ 0.44
COL6A3P12111 AC025048.3-201ENST00000590609 569 ntBASIC17.77■□□□□ 0.44
COL6A3P12111 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A3P12111 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A3P12111 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A3P12111 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.77■□□□□ 0.44
COL6A3P12111 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL6A3P12111 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL6A3P12111 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
COL6A3P12111 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
COL6A3P12111 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.77■□□□□ 0.44
COL6A3P12111 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.77■□□□□ 0.44
COL6A3P12111 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
COL6A3P12111 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.77■□□□□ 0.44
COL6A3P12111 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
COL6A3P12111 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.77■□□□□ 0.43
COL6A3P12111 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.77■□□□□ 0.43
COL6A3P12111 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A3P12111 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.77■□□□□ 0.43
COL6A3P12111 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A3P12111 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.77■□□□□ 0.43
COL6A3P12111 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL6A3P12111 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.77■□□□□ 0.43
COL6A3P12111 AC109462.3-201ENST00000573934 613 ntBASIC17.77■□□□□ 0.43
COL6A3P12111 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL6A3P12111 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.76■□□□□ 0.43
COL6A3P12111 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.76■□□□□ 0.43
COL6A3P12111 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.76■□□□□ 0.43
COL6A3P12111 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.76■□□□□ 0.43
COL6A3P12111 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
COL6A3P12111 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.76■□□□□ 0.43
COL6A3P12111 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.76■□□□□ 0.43
COL6A3P12111 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.76■□□□□ 0.43
COL6A3P12111 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL6A3P12111 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC17.76■□□□□ 0.43
COL6A3P12111 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.76■□□□□ 0.43
COL6A3P12111 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.76■□□□□ 0.43
COL6A3P12111 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL6A3P12111 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 AC093484.2-201ENST00000580996 2166 ntBASIC17.75■□□□□ 0.43
COL6A3P12111 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.75■□□□□ 0.43
COL6A3P12111 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL6A3P12111 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL6A3P12111 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 BTNL10-201ENST00000595971 695 ntBASIC17.75■□□□□ 0.43
COL6A3P12111 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.75■□□□□ 0.43
COL6A3P12111 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL6A3P12111 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms