Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
TNFP01375 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TNFP01375 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.85■□□□□ 0.29
TNFP01375 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.85■□□□□ 0.29
TNFP01375 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.85■□□□□ 0.29
TNFP01375 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
TNFP01375 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
TNFP01375 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TNFP01375 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TNFP01375 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.85■□□□□ 0.29
TNFP01375 AC211486.1-202ENST00000416371 468 ntBASIC16.85■□□□□ 0.29
TNFP01375 AC004967.1-201ENST00000453589 447 ntBASIC16.85■□□□□ 0.29
TNFP01375 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.85■□□□□ 0.29
TNFP01375 AC211476.1-201ENST00000503899 468 ntBASIC16.85■□□□□ 0.29
TNFP01375 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.85■□□□□ 0.29
TNFP01375 KRT19P2-202ENST00000557173 1012 ntBASIC16.85■□□□□ 0.29
TNFP01375 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
TNFP01375 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 C20orf181-201ENST00000623918 480 ntBASIC16.85■□□□□ 0.29
TNFP01375 AC134684.3-201ENST00000641758 218 ntBASIC16.85■□□□□ 0.29
TNFP01375 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.85■□□□□ 0.29
TNFP01375 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.85■□□□□ 0.29
TNFP01375 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.85■□□□□ 0.29
TNFP01375 AC025580.3-201ENST00000617932 1424 ntBASIC16.85■□□□□ 0.29
TNFP01375 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.85■□□□□ 0.29
TNFP01375 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TNFP01375 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.85■□□□□ 0.29
TNFP01375 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
TNFP01375 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
TNFP01375 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TNFP01375 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.84■□□□□ 0.29
TNFP01375 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TNFP01375 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
TNFP01375 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
TNFP01375 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.84■□□□□ 0.29
TNFP01375 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.84■□□□□ 0.29
TNFP01375 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.84■□□□□ 0.29
TNFP01375 PDPK2P-202ENST00000562415 1191 ntBASIC16.84■□□□□ 0.29
TNFP01375 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
TNFP01375 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.84■□□□□ 0.29
TNFP01375 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.84■□□□□ 0.29
TNFP01375 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TNFP01375 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.84■□□□□ 0.29
TNFP01375 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.84■□□□□ 0.29
TNFP01375 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TNFP01375 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
TNFP01375 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TNFP01375 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TNFP01375 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.83■□□□□ 0.29
TNFP01375 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
TNFP01375 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.83■□□□□ 0.29
TNFP01375 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
TNFP01375 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
TNFP01375 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TNFP01375 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TNFP01375 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
TNFP01375 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.83■□□□□ 0.28
TNFP01375 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
TNFP01375 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TNFP01375 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TNFP01375 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TNFP01375 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.83■□□□□ 0.28
TNFP01375 FAM185BP-201ENST00000443595 716 ntBASIC16.83■□□□□ 0.28
TNFP01375 AC087163.2-201ENST00000457299 853 ntBASIC16.83■□□□□ 0.28
TNFP01375 AC074386.1-202ENST00000463561 864 ntBASIC16.83■□□□□ 0.28
TNFP01375 AC092183.1-201ENST00000469884 875 ntBASIC16.83■□□□□ 0.28
TNFP01375 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.83■□□□□ 0.28
TNFP01375 AC008764.6-201ENST00000595909 2069 ntBASIC16.83■□□□□ 0.28
TNFP01375 AC129492.6-201ENST00000611383 1305 ntBASIC16.83■□□□□ 0.28
TNFP01375 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TNFP01375 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
TNFP01375 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms