Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HIF3AQ9Y2N7 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 AC011676.5-201ENST00000624864 2660 ntBASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 DRAXINP1-201ENST00000437611 948 ntBASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 FAM210CP-201ENST00000445714 574 ntBASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 TSSC2-201ENST00000450217 709 ntBASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HIF3AQ9Y2N7 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 AC233702.3-201ENST00000578656 1387 ntBASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 DBP-204ENST00000599385 709 ntTSL 3 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 Z69720.1-201ENST00000601483 472 ntBASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 AC009336.1-201ENST00000608941 1553 ntBASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 AD001527.2-201ENST00000622994 785 ntBASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 KRT18P1-202ENST00000452408 1331 ntBASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HIF3AQ9Y2N7 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms