Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.77■□□□□ 0.92
BRCA1P38398 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.77■□□□□ 0.92
BRCA1P38398 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.77■□□□□ 0.92
BRCA1P38398 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.77■□□□□ 0.92
BRCA1P38398 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
BRCA1P38398 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.77■□□□□ 0.92
BRCA1P38398 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC20.77■□□□□ 0.92
BRCA1P38398 TTTY23B-201ENST00000442790 549 ntBASIC20.77■□□□□ 0.92
BRCA1P38398 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.77■□□□□ 0.92
BRCA1P38398 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.77■□□□□ 0.92
BRCA1P38398 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BRCA1P38398 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.77■□□□□ 0.92
BRCA1P38398 AC003101.2-201ENST00000612557 442 ntBASIC20.77■□□□□ 0.92
BRCA1P38398 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
BRCA1P38398 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
BRCA1P38398 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRCA1P38398 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.76■□□□□ 0.91
BRCA1P38398 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
BRCA1P38398 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRCA1P38398 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRCA1P38398 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
BRCA1P38398 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BRCA1P38398 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRCA1P38398 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
BRCA1P38398 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
BRCA1P38398 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BRCA1P38398 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRCA1P38398 AC008494.3-201ENST00000606615 944 ntBASIC20.76■□□□□ 0.91
BRCA1P38398 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
BRCA1P38398 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.76■□□□□ 0.91
BRCA1P38398 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.76■□□□□ 0.91
BRCA1P38398 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BRCA1P38398 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
BRCA1P38398 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.76■□□□□ 0.91
BRCA1P38398 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
BRCA1P38398 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.75■□□□□ 0.91
BRCA1P38398 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
BRCA1P38398 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.75■□□□□ 0.91
BRCA1P38398 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 CETN4P-206ENST00000642099 2168 ntBASIC20.75■□□□□ 0.91
BRCA1P38398 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.75■□□□□ 0.91
BRCA1P38398 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.75■□□□□ 0.91
BRCA1P38398 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.75■□□□□ 0.91
BRCA1P38398 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
BRCA1P38398 RAB43P1-201ENST00000561790 589 ntBASIC20.75■□□□□ 0.91
BRCA1P38398 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
BRCA1P38398 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRCA1P38398 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.74■□□□□ 0.91
BRCA1P38398 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.74■□□□□ 0.91
BRCA1P38398 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRCA1P38398 AC135776.1-201ENST00000319817 2481 ntBASIC20.74■□□□□ 0.91
BRCA1P38398 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.74■□□□□ 0.91
BRCA1P38398 AC004945.1-201ENST00000416738 983 ntBASIC20.74■□□□□ 0.91
BRCA1P38398 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.74■□□□□ 0.91
BRCA1P38398 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.74■□□□□ 0.91
BRCA1P38398 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
BRCA1P38398 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
BRCA1P38398 CHCHD2P3-201ENST00000603038 451 ntBASIC20.74■□□□□ 0.91
BRCA1P38398 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.74■□□□□ 0.91
BRCA1P38398 AL133215.2-201ENST00000609242 977 ntBASIC20.74■□□□□ 0.91
BRCA1P38398 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BRCA1P38398 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
BRCA1P38398 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRCA1P38398 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
BRCA1P38398 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRCA1P38398 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
BRCA1P38398 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BRCA1P38398 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BRCA1P38398 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms