Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HDDC3Q8N4P3 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
HDDC3Q8N4P3 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
HDDC3Q8N4P3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
HDDC3Q8N4P3 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
HDDC3Q8N4P3 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 ACTG1P4-201ENST00000425123 1122 ntBASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 HCG4B-203ENST00000450128 991 ntBASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 ALG1L5P-201ENST00000482043 771 ntBASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 AC018845.2-201ENST00000568326 409 ntBASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 GGTLC5P-201ENST00000617623 998 ntBASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 LINC01451-201ENST00000623792 534 ntBASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HDDC3Q8N4P3 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 AL354751.1-201ENST00000412768 1863 ntBASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 AL139327.4-201ENST00000612362 153 ntBASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 AL135999.2-201ENST00000622438 1686 ntBASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 PI4KAP1-204ENST00000612579 1703 ntBASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDDC3Q8N4P3 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 AC106028.4-201ENST00000614509 607 ntBASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 AC010654.1-201ENST00000615722 808 ntBASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms