Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 AC080080.1-201ENST00000625121 2420 ntBASIC20.96■□□□□ 0.95
VPS53Q5VIR6 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 MTDHP3-201ENST00000594186 672 ntBASIC20.96■□□□□ 0.95
VPS53Q5VIR6 AL355877.3-201ENST00000622820 899 ntBASIC20.96■□□□□ 0.95
VPS53Q5VIR6 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 PRORSD1P-202ENST00000563365 2154 ntBASIC20.96■□□□□ 0.95
VPS53Q5VIR6 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS53Q5VIR6 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.95■□□□□ 0.95
VPS53Q5VIR6 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.95■□□□□ 0.95
VPS53Q5VIR6 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 AC008608.2-201ENST00000606089 416 ntBASIC20.95■□□□□ 0.94
VPS53Q5VIR6 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 AL139327.4-201ENST00000612362 153 ntBASIC20.95■□□□□ 0.94
VPS53Q5VIR6 TP73-AS1-207ENST00000624167 988 ntBASIC20.95■□□□□ 0.94
VPS53Q5VIR6 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.95■□□□□ 0.94
VPS53Q5VIR6 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS53Q5VIR6 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 IGHV3-52-201ENST00000519770 353 ntBASIC20.94■□□□□ 0.94
VPS53Q5VIR6 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 AL031008.1-201ENST00000619963 541 ntBASIC20.94■□□□□ 0.94
VPS53Q5VIR6 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS53Q5VIR6 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms