Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.31■□□□□ 0.52
LIG3P49916 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.31■□□□□ 0.52
LIG3P49916 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.31■□□□□ 0.52
LIG3P49916 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIG3P49916 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.31■□□□□ 0.52
LIG3P49916 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.31■□□□□ 0.52
LIG3P49916 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.31■□□□□ 0.52
LIG3P49916 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LIG3P49916 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIG3P49916 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIG3P49916 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LIG3P49916 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 TSPY26P-202ENST00000565928 3884 ntBASIC18.3■□□□□ 0.52
LIG3P49916 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LIG3P49916 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
LIG3P49916 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.3■□□□□ 0.52
LIG3P49916 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
LIG3P49916 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.3■□□□□ 0.52
LIG3P49916 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.3■□□□□ 0.52
LIG3P49916 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.3■□□□□ 0.52
LIG3P49916 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.3■□□□□ 0.52
LIG3P49916 AC005332.3-201ENST00000589904 676 ntBASIC18.3■□□□□ 0.52
LIG3P49916 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.3■□□□□ 0.52
LIG3P49916 AL121672.3-201ENST00000608644 468 ntBASIC18.3■□□□□ 0.52
LIG3P49916 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.3■□□□□ 0.52
LIG3P49916 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.3■□□□□ 0.52
LIG3P49916 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.3■□□□□ 0.52
LIG3P49916 Z83836.1-201ENST00000624605 1642 ntBASIC18.3■□□□□ 0.52
LIG3P49916 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIG3P49916 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.3■□□□□ 0.52
LIG3P49916 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LIG3P49916 AC016734.2-201ENST00000624325 1377 ntBASIC18.3■□□□□ 0.52
LIG3P49916 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LIG3P49916 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LIG3P49916 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.29■□□□□ 0.52
LIG3P49916 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.29■□□□□ 0.52
LIG3P49916 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.29■□□□□ 0.52
LIG3P49916 KRT8P26-201ENST00000534154 1276 ntBASIC18.29■□□□□ 0.52
LIG3P49916 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.29■□□□□ 0.52
LIG3P49916 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.29■□□□□ 0.52
LIG3P49916 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.29■□□□□ 0.52
LIG3P49916 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.29■□□□□ 0.52
LIG3P49916 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LIG3P49916 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
LIG3P49916 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.29■□□□□ 0.52
LIG3P49916 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.29■□□□□ 0.52
LIG3P49916 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIG3P49916 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.29■□□□□ 0.52
LIG3P49916 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LIG3P49916 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.29■□□□□ 0.52
LIG3P49916 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.29■□□□□ 0.52
LIG3P49916 FLJ13224-201ENST00000313737 1514 ntBASIC18.28■□□□□ 0.52
LIG3P49916 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.28■□□□□ 0.52
LIG3P49916 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
LIG3P49916 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.28■□□□□ 0.52
LIG3P49916 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.28■□□□□ 0.52
LIG3P49916 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.28■□□□□ 0.52
LIG3P49916 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIG3P49916 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.28■□□□□ 0.52
LIG3P49916 TSSC2-201ENST00000450217 709 ntBASIC18.28■□□□□ 0.52
LIG3P49916 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms