Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 RPSAP43-201ENST00000402237 625 ntBASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 UPF3AP3-201ENST00000420996 769 ntBASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 AC096734.2-201ENST00000562054 433 ntBASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 BCL2-203ENST00000589955 5011 ntBASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 AL138688.1-201ENST00000624851 1594 ntBASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 AC010507.1-201ENST00000633895 436 ntBASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SMIM28A0A1B0GU29 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 MIR1233-2-201ENST00000408138 82 ntBASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 MIR1233-1-201ENST00000408722 82 ntBASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 GPX1P2-201ENST00000429271 606 ntBASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 AC112482.1-201ENST00000492080 688 ntBASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 SLC25A6P2-201ENST00000497974 877 ntBASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 AC010327.4-202ENST00000591484 748 ntBASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 AL513190.1-201ENST00000621254 727 ntBASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SMIM28A0A1B0GU29 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMIM28A0A1B0GU29 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMIM28A0A1B0GU29 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SMIM28A0A1B0GU29 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SMIM28A0A1B0GU29 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 AC016396.2-201ENST00000562575 1417 ntBASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 RHOQP3-201ENST00000437982 621 ntBASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 AC087163.2-201ENST00000457299 853 ntBASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 AC002310.6-201ENST00000624451 1377 ntBASIC18.51■□□□□ 0.55
SMIM28A0A1B0GU29 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms