Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TDP1Q9NUW8 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 AC129492.6-201ENST00000611383 1305 ntBASIC17.81■□□□□ 0.44
TDP1Q9NUW8 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 METTL21AP1-201ENST00000438852 635 ntBASIC17.81■□□□□ 0.44
TDP1Q9NUW8 AL513480.1-201ENST00000451731 511 ntBASIC17.81■□□□□ 0.44
TDP1Q9NUW8 AC087163.2-201ENST00000457299 853 ntBASIC17.81■□□□□ 0.44
TDP1Q9NUW8 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 AC091812.2-201ENST00000619081 385 ntBASIC17.81■□□□□ 0.44
TDP1Q9NUW8 AC006116.8-202ENST00000587620 1550 ntBASIC17.81■□□□□ 0.44
TDP1Q9NUW8 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.81■□□□□ 0.44
TDP1Q9NUW8 AC012317.2-201ENST00000623305 2251 ntBASIC17.81■□□□□ 0.44
TDP1Q9NUW8 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 AL354751.1-201ENST00000412768 1863 ntBASIC17.8■□□□□ 0.44
TDP1Q9NUW8 LYSMD4-203ENST00000378904 2122 ntBASIC17.8■□□□□ 0.44
TDP1Q9NUW8 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 SLC25A6P2-201ENST00000497974 877 ntBASIC17.8■□□□□ 0.44
TDP1Q9NUW8 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TDP1Q9NUW8 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 AC135050.7-201ENST00000624508 2218 ntBASIC17.79■□□□□ 0.44
TDP1Q9NUW8 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 SLC25A6P5-201ENST00000435663 894 ntBASIC17.79■□□□□ 0.44
TDP1Q9NUW8 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
TDP1Q9NUW8 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms