Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 FDX2-206ENST00000492239 773 ntTSL 2 BASIC15.4■□□□□ 0.06
MMP28Q9H239 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC15.4■□□□□ 0.06
MMP28Q9H239 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC15.4■□□□□ 0.06
MMP28Q9H239 AP000525.1-201ENST00000608286 694 ntBASIC15.4■□□□□ 0.06
MMP28Q9H239 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 AC097493.4-201ENST00000641197 219 ntBASIC15.4■□□□□ 0.06
MMP28Q9H239 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.4■□□□□ 0.06
MMP28Q9H239 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.4■□□□□ 0.06
MMP28Q9H239 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC15.4■□□□□ 0.06
MMP28Q9H239 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
MMP28Q9H239 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC15.4■□□□□ 0.06
MMP28Q9H239 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MMP28Q9H239 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
MMP28Q9H239 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 AC093010.1-201ENST00000473625 1624 ntBASIC15.39■□□□□ 0.05
MMP28Q9H239 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.39■□□□□ 0.05
MMP28Q9H239 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.39■□□□□ 0.05
MMP28Q9H239 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 RCN1P1-201ENST00000400413 996 ntBASIC15.39■□□□□ 0.05
MMP28Q9H239 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 CA15P1-201ENST00000481698 905 ntBASIC15.39■□□□□ 0.05
MMP28Q9H239 KRT18P41-201ENST00000518924 1277 ntBASIC15.39■□□□□ 0.05
MMP28Q9H239 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 PPOX-219ENST00000544598 813 ntTSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 FITM1-202ENST00000559294 800 ntBASIC15.39■□□□□ 0.05
MMP28Q9H239 AC012306.2-201ENST00000609350 630 ntBASIC15.39■□□□□ 0.05
MMP28Q9H239 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC15.39■□□□□ 0.05
MMP28Q9H239 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
MMP28Q9H239 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC15.39■□□□□ 0.05
MMP28Q9H239 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
MMP28Q9H239 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 AL513523.2-202ENST00000427283 2040 ntBASIC15.39■□□□□ 0.05
MMP28Q9H239 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
MMP28Q9H239 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
MMP28Q9H239 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MMP28Q9H239 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.39■□□□□ 0.05
MMP28Q9H239 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
MMP28Q9H239 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
MMP28Q9H239 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.38■□□□□ 0.05
MMP28Q9H239 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC15.38■□□□□ 0.05
MMP28Q9H239 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
MMP28Q9H239 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 LINC00304-203ENST00000565008 1864 ntBASIC15.38■□□□□ 0.05
MMP28Q9H239 CYP2T1P-202ENST00000641596 2535 ntBASIC15.38■□□□□ 0.05
MMP28Q9H239 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
MMP28Q9H239 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 MMP23A-201ENST00000234610 1017 ntBASIC15.38■□□□□ 0.05
MMP28Q9H239 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.38■□□□□ 0.05
MMP28Q9H239 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.38■□□□□ 0.05
MMP28Q9H239 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
MMP28Q9H239 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.38■□□□□ 0.05
MMP28Q9H239 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms