Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 KRT18P67-201ENST00000432816 1264 ntBASIC15.63■□□□□ 0.09
CPNE4Q96A23 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 SART3-203ENST00000546611 1184 ntBASIC15.63■□□□□ 0.09
CPNE4Q96A23 NKAPP1-205ENST00000585790 367 ntBASIC15.63■□□□□ 0.09
CPNE4Q96A23 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 TP73-AS1-207ENST00000624167 988 ntBASIC15.63■□□□□ 0.09
CPNE4Q96A23 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.63■□□□□ 0.09
CPNE4Q96A23 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CPNE4Q96A23 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 RPS2P28-201ENST00000314255 741 ntBASIC15.62■□□□□ 0.09
CPNE4Q96A23 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 BX005266.1-201ENST00000473402 457 ntBASIC15.62■□□□□ 0.09
CPNE4Q96A23 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CPNE4Q96A23 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CPNE4Q96A23 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 AC046185.3-201ENST00000623228 1824 ntBASIC15.61■□□□□ 0.09
CPNE4Q96A23 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 AC068880.1-201ENST00000507289 2297 ntBASIC15.61■□□□□ 0.09
CPNE4Q96A23 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 AC026396.1-201ENST00000419388 421 ntBASIC15.61■□□□□ 0.09
CPNE4Q96A23 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 MTDHP4-201ENST00000600287 670 ntBASIC15.61■□□□□ 0.09
CPNE4Q96A23 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 AL773604.1-201ENST00000617417 272 ntBASIC15.61■□□□□ 0.09
CPNE4Q96A23 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.61■□□□□ 0.09
CPNE4Q96A23 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CPNE4Q96A23 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms