Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RTL3Q8N8U3 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
RTL3Q8N8U3 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RTL3Q8N8U3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.82■□□□□ 0.44
RTL3Q8N8U3 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
RTL3Q8N8U3 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 SLC25A1P3-201ENST00000395415 828 ntBASIC17.81■□□□□ 0.44
RTL3Q8N8U3 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 FAM197Y8-203ENST00000450145 560 ntBASIC17.81■□□□□ 0.44
RTL3Q8N8U3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 RNPS1P1-201ENST00000507437 918 ntBASIC17.81■□□□□ 0.44
RTL3Q8N8U3 AC073648.2-201ENST00000510116 352 ntBASIC17.81■□□□□ 0.44
RTL3Q8N8U3 AP002469.2-201ENST00000531724 424 ntBASIC17.81■□□□□ 0.44
RTL3Q8N8U3 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 AL645608.8-201ENST00000606034 2086 ntBASIC17.81■□□□□ 0.44
RTL3Q8N8U3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RTL3Q8N8U3 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 AC026471.1-201ENST00000564629 3026 ntBASIC17.8■□□□□ 0.44
RTL3Q8N8U3 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 LINC00982-205ENST00000420957 435 ntBASIC17.8■□□□□ 0.44
RTL3Q8N8U3 KRT18P67-201ENST00000432816 1264 ntBASIC17.8■□□□□ 0.44
RTL3Q8N8U3 AC018712.1-201ENST00000455767 687 ntBASIC17.8■□□□□ 0.44
RTL3Q8N8U3 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 AL589182.2-201ENST00000619332 1049 ntBASIC17.8■□□□□ 0.44
RTL3Q8N8U3 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 NCF1C-201ENST00000438382 1427 ntBASIC17.8■□□□□ 0.44
RTL3Q8N8U3 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RTL3Q8N8U3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 AF186996.4-201ENST00000467186 377 ntBASIC17.79■□□□□ 0.44
RTL3Q8N8U3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 AL121894.2-201ENST00000602977 491 ntBASIC17.79■□□□□ 0.44
RTL3Q8N8U3 AC064862.7-201ENST00000604520 867 ntBASIC17.79■□□□□ 0.44
RTL3Q8N8U3 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RTL3Q8N8U3 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RTL3Q8N8U3 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTL3Q8N8U3 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTL3Q8N8U3 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
RTL3Q8N8U3 AC093525.9-201ENST00000624961 1746 ntBASIC17.78■□□□□ 0.44
RTL3Q8N8U3 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.78■□□□□ 0.44
RTL3Q8N8U3 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTL3Q8N8U3 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.78■□□□□ 0.44
RTL3Q8N8U3 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTL3Q8N8U3 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
RTL3Q8N8U3 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTL3Q8N8U3 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms