Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC104692.2-201ENST00000603054 253 ntBASIC17.95■□□□□ 0.46
NEK3P51956 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.95■□□□□ 0.46
NEK3P51956 INTS4P1-201ENST00000438455 1935 ntBASIC17.95■□□□□ 0.46
NEK3P51956 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
NEK3P51956 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
NEK3P51956 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
NEK3P51956 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NEK3P51956 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NEK3P51956 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
NEK3P51956 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.95■□□□□ 0.46
NEK3P51956 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NEK3P51956 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NEK3P51956 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NEK3P51956 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.95■□□□□ 0.46
NEK3P51956 LINC00304-203ENST00000565008 1864 ntBASIC17.95■□□□□ 0.46
NEK3P51956 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.95■□□□□ 0.46
NEK3P51956 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
NEK3P51956 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
NEK3P51956 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 AC018695.7-201ENST00000624587 2492 ntBASIC17.94■□□□□ 0.46
NEK3P51956 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.94■□□□□ 0.46
NEK3P51956 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.94■□□□□ 0.46
NEK3P51956 AC132008.2-207ENST00000454517 770 ntBASIC17.94■□□□□ 0.46
NEK3P51956 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.94■□□□□ 0.46
NEK3P51956 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.94■□□□□ 0.46
NEK3P51956 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.94■□□□□ 0.46
NEK3P51956 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.94■□□□□ 0.46
NEK3P51956 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.94■□□□□ 0.46
NEK3P51956 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
NEK3P51956 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
NEK3P51956 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.94■□□□□ 0.46
NEK3P51956 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
NEK3P51956 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
NEK3P51956 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.94■□□□□ 0.46
NEK3P51956 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NEK3P51956 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
NEK3P51956 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
NEK3P51956 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.93■□□□□ 0.46
NEK3P51956 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 FDX1P1-201ENST00000449115 551 ntBASIC17.93■□□□□ 0.46
NEK3P51956 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.93■□□□□ 0.46
NEK3P51956 AF238378.1-201ENST00000526806 358 ntBASIC17.93■□□□□ 0.46
NEK3P51956 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.93■□□□□ 0.46
NEK3P51956 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.93■□□□□ 0.46
NEK3P51956 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.93■□□□□ 0.46
NEK3P51956 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.93■□□□□ 0.46
NEK3P51956 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.93■□□□□ 0.46
NEK3P51956 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.93■□□□□ 0.46
NEK3P51956 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.93■□□□□ 0.46
NEK3P51956 OR6D1P-202ENST00000641007 5290 ntBASIC17.93■□□□□ 0.46
NEK3P51956 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
NEK3P51956 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.93■□□□□ 0.46
NEK3P51956 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
NEK3P51956 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.93■□□□□ 0.46
NEK3P51956 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.93■□□□□ 0.46
NEK3P51956 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
NEK3P51956 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NEK3P51956 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.92■□□□□ 0.46
NEK3P51956 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms