Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HOXC4P09017 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 MKNK2P1-201ENST00000437526 628 ntBASIC16.86■□□□□ 0.29
HOXC4P09017 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.86■□□□□ 0.29
HOXC4P09017 YBX1P5-201ENST00000509441 847 ntBASIC16.86■□□□□ 0.29
HOXC4P09017 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXC4P09017 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.86■□□□□ 0.29
HOXC4P09017 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.86■□□□□ 0.29
HOXC4P09017 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 ACTL9-202ENST00000612068 1252 ntBASIC16.86■□□□□ 0.29
HOXC4P09017 AL513190.1-201ENST00000621254 727 ntBASIC16.86■□□□□ 0.29
HOXC4P09017 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 BCAR1-209ENST00000546196 1340 ntBASIC16.86■□□□□ 0.29
HOXC4P09017 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
HOXC4P09017 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.86■□□□□ 0.29
HOXC4P09017 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HOXC4P09017 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC4P09017 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC4P09017 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
HOXC4P09017 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.85■□□□□ 0.29
HOXC4P09017 AC074386.1-202ENST00000463561 864 ntBASIC16.85■□□□□ 0.29
HOXC4P09017 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.85■□□□□ 0.29
HOXC4P09017 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC4P09017 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC4P09017 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.85■□□□□ 0.29
HOXC4P09017 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC4P09017 AC005829.1-201ENST00000570002 483 ntBASIC16.85■□□□□ 0.29
HOXC4P09017 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.85■□□□□ 0.29
HOXC4P09017 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.85■□□□□ 0.29
HOXC4P09017 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.85■□□□□ 0.29
HOXC4P09017 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.85■□□□□ 0.29
HOXC4P09017 AC055717.3-201ENST00000622967 595 ntBASIC16.85■□□□□ 0.29
HOXC4P09017 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HOXC4P09017 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 AC025580.3-201ENST00000617932 1424 ntBASIC16.85■□□□□ 0.29
HOXC4P09017 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.85■□□□□ 0.29
HOXC4P09017 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HOXC4P09017 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.85■□□□□ 0.29
HOXC4P09017 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HOXC4P09017 AC116353.5-201ENST00000638148 1699 ntBASIC16.85■□□□□ 0.29
HOXC4P09017 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HOXC4P09017 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HOXC4P09017 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.84■□□□□ 0.29
HOXC4P09017 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 SLC25A1P3-201ENST00000395415 828 ntBASIC16.84■□□□□ 0.29
HOXC4P09017 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.84■□□□□ 0.29
HOXC4P09017 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.84■□□□□ 0.29
HOXC4P09017 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.84■□□□□ 0.29
HOXC4P09017 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXC4P09017 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.84■□□□□ 0.29
HOXC4P09017 REXO1L3P-201ENST00000622202 1288 ntBASIC16.84■□□□□ 0.29
HOXC4P09017 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HOXC4P09017 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXC4P09017 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXC4P09017 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.84■□□□□ 0.29
HOXC4P09017 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXC4P09017 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXC4P09017 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HOXC4P09017 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC4P09017 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
HOXC4P09017 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
HOXC4P09017 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HOXC4P09017 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
HOXC4P09017 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms