Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
APOEP02649 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.24■□□□□ 0.51
APOEP02649 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.24■□□□□ 0.51
APOEP02649 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
APOEP02649 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.24■□□□□ 0.51
APOEP02649 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.24■□□□□ 0.51
APOEP02649 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.24■□□□□ 0.51
APOEP02649 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
APOEP02649 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 MYCLP1-201ENST00000372451 1075 ntBASIC18.24■□□□□ 0.51
APOEP02649 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.24■□□□□ 0.51
APOEP02649 AC005104.2-201ENST00000427818 678 ntBASIC18.24■□□□□ 0.51
APOEP02649 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.24■□□□□ 0.51
APOEP02649 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
APOEP02649 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.24■□□□□ 0.51
APOEP02649 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.24■□□□□ 0.51
APOEP02649 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.24■□□□□ 0.51
APOEP02649 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 LINC01451-201ENST00000623792 534 ntBASIC18.24■□□□□ 0.51
APOEP02649 AL353593.2-201ENST00000602529 1483 ntBASIC18.24■□□□□ 0.51
APOEP02649 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.24■□□□□ 0.51
APOEP02649 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 AC108860.2-201ENST00000562760 2183 ntBASIC18.24■□□□□ 0.51
APOEP02649 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
APOEP02649 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
APOEP02649 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.23■□□□□ 0.51
APOEP02649 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
APOEP02649 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.23■□□□□ 0.51
APOEP02649 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
APOEP02649 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
APOEP02649 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
APOEP02649 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.23■□□□□ 0.51
APOEP02649 PMPCAP1-201ENST00000508114 1576 ntBASIC18.23■□□□□ 0.51
APOEP02649 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.23■□□□□ 0.51
APOEP02649 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.23■□□□□ 0.51
APOEP02649 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.23■□□□□ 0.51
APOEP02649 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 SCARNA2-201ENST00000458748 420 ntBASIC18.23■□□□□ 0.51
APOEP02649 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.23■□□□□ 0.51
APOEP02649 AL031008.1-201ENST00000619963 541 ntBASIC18.23■□□□□ 0.51
APOEP02649 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
APOEP02649 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
APOEP02649 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.23■□□□□ 0.51
APOEP02649 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 REXO1L11P-201ENST00000620964 1927 ntBASIC18.23■□□□□ 0.51
APOEP02649 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.23■□□□□ 0.51
APOEP02649 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
APOEP02649 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
APOEP02649 AC141586.5-201ENST00000624546 2050 ntBASIC18.22■□□□□ 0.51
APOEP02649 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
APOEP02649 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.22■□□□□ 0.51
APOEP02649 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
APOEP02649 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.22■□□□□ 0.51
APOEP02649 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.22■□□□□ 0.51
APOEP02649 AC003669.1-201ENST00000334569 611 ntBASIC18.22■□□□□ 0.51
APOEP02649 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.22■□□□□ 0.51
APOEP02649 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.22■□□□□ 0.51
APOEP02649 KLF4P1-201ENST00000412782 1185 ntBASIC18.22■□□□□ 0.51
APOEP02649 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.22■□□□□ 0.51
APOEP02649 AC079781.3-201ENST00000449110 356 ntBASIC18.22■□□□□ 0.51
APOEP02649 FGFR3P6-201ENST00000457012 610 ntBASIC18.22■□□□□ 0.51
APOEP02649 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.22■□□□□ 0.51
APOEP02649 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
APOEP02649 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.22■□□□□ 0.51
APOEP02649 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
APOEP02649 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
APOEP02649 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.22■□□□□ 0.51
APOEP02649 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
APOEP02649 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
APOEP02649 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
APOEP02649 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
APOEP02649 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.22■□□□□ 0.51
APOEP02649 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
APOEP02649 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
APOEP02649 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.22■□□□□ 0.51
APOEP02649 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
APOEP02649 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 PRORSD1P-202ENST00000563365 2154 ntBASIC18.21■□□□□ 0.51
APOEP02649 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms