Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.2■□□□□ 0.5
HDAC4P56524 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.2■□□□□ 0.5
HDAC4P56524 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HDAC4P56524 CLEC4GP1-201ENST00000596555 870 ntBASIC18.2■□□□□ 0.5
HDAC4P56524 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.2■□□□□ 0.5
HDAC4P56524 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.2■□□□□ 0.5
HDAC4P56524 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDAC4P56524 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDAC4P56524 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HDAC4P56524 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDAC4P56524 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDAC4P56524 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDAC4P56524 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.2■□□□□ 0.5
HDAC4P56524 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDAC4P56524 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDAC4P56524 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.2■□□□□ 0.5
HDAC4P56524 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
HDAC4P56524 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HDAC4P56524 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.19■□□□□ 0.5
HDAC4P56524 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.19■□□□□ 0.5
HDAC4P56524 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.19■□□□□ 0.5
HDAC4P56524 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.19■□□□□ 0.5
HDAC4P56524 ABCD1P5-201ENST00000445663 754 ntBASIC18.19■□□□□ 0.5
HDAC4P56524 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.19■□□□□ 0.5
HDAC4P56524 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.19■□□□□ 0.5
HDAC4P56524 KRT18P31-201ENST00000506277 1292 ntBASIC18.19■□□□□ 0.5
HDAC4P56524 KRT18P56-201ENST00000507275 550 ntBASIC18.19■□□□□ 0.5
HDAC4P56524 AC016396.2-201ENST00000562575 1417 ntBASIC18.19■□□□□ 0.5
HDAC4P56524 PRELID1P1-202ENST00000567272 903 ntBASIC18.19■□□□□ 0.5
HDAC4P56524 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HDAC4P56524 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.19■□□□□ 0.5
HDAC4P56524 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HDAC4P56524 AC009336.1-201ENST00000608941 1553 ntBASIC18.19■□□□□ 0.5
HDAC4P56524 AL732292.2-201ENST00000609649 430 ntBASIC18.19■□□□□ 0.5
HDAC4P56524 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.19■□□□□ 0.5
HDAC4P56524 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HDAC4P56524 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.19■□□□□ 0.5
HDAC4P56524 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDAC4P56524 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HDAC4P56524 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.18■□□□□ 0.5
HDAC4P56524 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.18■□□□□ 0.5
HDAC4P56524 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HDAC4P56524 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.18■□□□□ 0.5
HDAC4P56524 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 AC003669.1-201ENST00000334569 611 ntBASIC18.18■□□□□ 0.5
HDAC4P56524 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
HDAC4P56524 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HDAC4P56524 AC132008.2-207ENST00000454517 770 ntBASIC18.18■□□□□ 0.5
HDAC4P56524 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.18■□□□□ 0.5
HDAC4P56524 STK19B-204ENST00000512515 211 ntBASIC18.18■□□□□ 0.5
HDAC4P56524 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.18■□□□□ 0.5
HDAC4P56524 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.18■□□□□ 0.5
HDAC4P56524 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.18■□□□□ 0.5
HDAC4P56524 AP001269.4-201ENST00000609611 512 ntBASIC18.18■□□□□ 0.5
HDAC4P56524 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.18■□□□□ 0.5
HDAC4P56524 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HDAC4P56524 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HDAC4P56524 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
HDAC4P56524 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
HDAC4P56524 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
HDAC4P56524 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC4P56524 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC4P56524 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC4P56524 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms