Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 UPF3AP3-201ENST00000420996 769 ntBASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 GPX1P2-201ENST00000429271 606 ntBASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 AL138688.1-201ENST00000624851 1594 ntBASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 AC020763.4-201ENST00000623414 4170 ntBASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RPAP1Q9BWH6 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPAP1Q9BWH6 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 YBX2P1-201ENST00000394192 760 ntBASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 CRCP-205ENST00000431089 942 ntTSL 2 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 AC009947.1-201ENST00000444350 727 ntBASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 BX005266.1-201ENST00000473402 457 ntBASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 AC006557.2-201ENST00000592985 1240 ntBASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 PCDHA12-202ENST00000613593 2588 ntBASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
RPAP1Q9BWH6 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 RPSAP43-201ENST00000402237 625 ntBASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 SPDYE21P-201ENST00000413323 827 ntBASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 AC010327.4-202ENST00000591484 748 ntBASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC21.1■□□□□ 0.97
RPAP1Q9BWH6 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms