Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CXCL12P48061 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL12P48061 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.24■□□□□ 0.35
CXCL12P48061 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.24■□□□□ 0.35
CXCL12P48061 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 AC046185.3-201ENST00000623228 1824 ntBASIC17.24■□□□□ 0.35
CXCL12P48061 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.24■□□□□ 0.35
CXCL12P48061 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.24■□□□□ 0.35
CXCL12P48061 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.24■□□□□ 0.35
CXCL12P48061 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.24■□□□□ 0.35
CXCL12P48061 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 MIR661-201ENST00000384842 89 ntBASIC17.24■□□□□ 0.35
CXCL12P48061 GPS2P2-201ENST00000430745 888 ntBASIC17.24■□□□□ 0.35
CXCL12P48061 GAPDHP21-201ENST00000450301 1010 ntBASIC17.24■□□□□ 0.35
CXCL12P48061 UGT1A2P-201ENST00000454886 866 ntBASIC17.24■□□□□ 0.35
CXCL12P48061 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.24■□□□□ 0.35
CXCL12P48061 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.24■□□□□ 0.35
CXCL12P48061 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.24■□□□□ 0.35
CXCL12P48061 IGHV3-42-201ENST00000520410 361 ntBASIC17.24■□□□□ 0.35
CXCL12P48061 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CXCL12P48061 SLC25A39P2-201ENST00000537614 270 ntBASIC17.24■□□□□ 0.35
CXCL12P48061 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.24■□□□□ 0.35
CXCL12P48061 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.24■□□□□ 0.35
CXCL12P48061 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 AC008761.3-201ENST00000624803 892 ntBASIC17.24■□□□□ 0.35
CXCL12P48061 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.24■□□□□ 0.35
CXCL12P48061 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.24■□□□□ 0.35
CXCL12P48061 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 FO538757.1-201ENST00000623083 1397 ntBASIC17.24■□□□□ 0.35
CXCL12P48061 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL12P48061 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.24■□□□□ 0.35
CXCL12P48061 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CXCL12P48061 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CXCL12P48061 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.23■□□□□ 0.35
CXCL12P48061 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.23■□□□□ 0.35
CXCL12P48061 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.23■□□□□ 0.35
CXCL12P48061 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.23■□□□□ 0.35
CXCL12P48061 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.23■□□□□ 0.35
CXCL12P48061 SPDYE7P-202ENST00000420373 878 ntBASIC17.23■□□□□ 0.35
CXCL12P48061 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.23■□□□□ 0.35
CXCL12P48061 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.23■□□□□ 0.35
CXCL12P48061 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.23■□□□□ 0.35
CXCL12P48061 MIR4515-201ENST00000584082 81 ntBASIC17.23■□□□□ 0.35
CXCL12P48061 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.23■□□□□ 0.35
CXCL12P48061 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
CXCL12P48061 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.23■□□□□ 0.35
CXCL12P48061 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL12P48061 AL020996.1-203ENST00000536896 2307 ntBASIC17.22■□□□□ 0.35
CXCL12P48061 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.22■□□□□ 0.35
CXCL12P48061 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
CXCL12P48061 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.22■□□□□ 0.35
CXCL12P48061 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CXCL12P48061 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 TREML5P-201ENST00000421694 576 ntBASIC17.22■□□□□ 0.35
CXCL12P48061 SPCS2P4-201ENST00000436160 681 ntBASIC17.22■□□□□ 0.35
CXCL12P48061 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.22■□□□□ 0.35
CXCL12P48061 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.22■□□□□ 0.35
CXCL12P48061 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.22■□□□□ 0.35
CXCL12P48061 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.22■□□□□ 0.35
CXCL12P48061 AL390754.1-201ENST00000619088 582 ntBASIC17.22■□□□□ 0.35
CXCL12P48061 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CXCL12P48061 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CXCL12P48061 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms