Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF40O75150 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF40O75150 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.87■□□□□ 0.61
RNF40O75150 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF40O75150 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF40O75150 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF40O75150 AC138894.3-201ENST00000603787 634 ntBASIC18.87■□□□□ 0.61
RNF40O75150 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF40O75150 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF40O75150 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF40O75150 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.87■□□□□ 0.61
RNF40O75150 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF40O75150 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
RNF40O75150 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
RNF40O75150 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RNF40O75150 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF40O75150 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF40O75150 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF40O75150 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF40O75150 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
RNF40O75150 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
RNF40O75150 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
RNF40O75150 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
RNF40O75150 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
RNF40O75150 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.86■□□□□ 0.61
RNF40O75150 AL160237.2-201ENST00000556165 472 ntBASIC18.86■□□□□ 0.61
RNF40O75150 AC074051.2-201ENST00000565115 352 ntBASIC18.86■□□□□ 0.61
RNF40O75150 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.86■□□□□ 0.61
RNF40O75150 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.86■□□□□ 0.61
RNF40O75150 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.86■□□□□ 0.61
RNF40O75150 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.86■□□□□ 0.61
RNF40O75150 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
RNF40O75150 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
RNF40O75150 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
RNF40O75150 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
RNF40O75150 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF40O75150 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.85■□□□□ 0.61
RNF40O75150 LINC00167-201ENST00000530583 1419 ntBASIC18.85■□□□□ 0.61
RNF40O75150 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
RNF40O75150 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
RNF40O75150 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF40O75150 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF40O75150 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RNF40O75150 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF40O75150 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF40O75150 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF40O75150 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.85■□□□□ 0.61
RNF40O75150 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF40O75150 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.85■□□□□ 0.61
RNF40O75150 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
RNF40O75150 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RNF40O75150 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RNF40O75150 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
RNF40O75150 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
RNF40O75150 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
RNF40O75150 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF40O75150 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms