Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.58■□□□□ 0.25
PROM1O43490 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
PROM1O43490 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.58■□□□□ 0.25
PROM1O43490 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PROM1O43490 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
PROM1O43490 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
PROM1O43490 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
PROM1O43490 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PROM1O43490 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
PROM1O43490 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.58■□□□□ 0.25
PROM1O43490 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PROM1O43490 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
PROM1O43490 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.58■□□□□ 0.25
PROM1O43490 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
PROM1O43490 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PROM1O43490 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
PROM1O43490 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.58■□□□□ 0.24
PROM1O43490 NUS1P1-201ENST00000446295 882 ntBASIC16.58■□□□□ 0.24
PROM1O43490 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PROM1O43490 KRT16P4-201ENST00000453883 522 ntBASIC16.58■□□□□ 0.24
PROM1O43490 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.58■□□□□ 0.24
PROM1O43490 AC111152.3-201ENST00000569699 673 ntBASIC16.58■□□□□ 0.24
PROM1O43490 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PROM1O43490 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.58■□□□□ 0.24
PROM1O43490 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.58■□□□□ 0.24
PROM1O43490 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PROM1O43490 AL353593.2-201ENST00000602529 1483 ntBASIC16.58■□□□□ 0.24
PROM1O43490 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.58■□□□□ 0.24
PROM1O43490 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PROM1O43490 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PROM1O43490 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PROM1O43490 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PROM1O43490 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.58■□□□□ 0.24
PROM1O43490 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PROM1O43490 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PROM1O43490 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.58■□□□□ 0.24
PROM1O43490 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PROM1O43490 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.57■□□□□ 0.24
PROM1O43490 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.57■□□□□ 0.24
PROM1O43490 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.57■□□□□ 0.24
PROM1O43490 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.57■□□□□ 0.24
PROM1O43490 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.57■□□□□ 0.24
PROM1O43490 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
PROM1O43490 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.57■□□□□ 0.24
PROM1O43490 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
PROM1O43490 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.57■□□□□ 0.24
PROM1O43490 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PROM1O43490 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PROM1O43490 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
PROM1O43490 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.57■□□□□ 0.24
PROM1O43490 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.57■□□□□ 0.24
PROM1O43490 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.57■□□□□ 0.24
PROM1O43490 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.57■□□□□ 0.24
PROM1O43490 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.57■□□□□ 0.24
PROM1O43490 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.57■□□□□ 0.24
PROM1O43490 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.57■□□□□ 0.24
PROM1O43490 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PROM1O43490 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.56■□□□□ 0.24
PROM1O43490 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PROM1O43490 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.56■□□□□ 0.24
PROM1O43490 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.56■□□□□ 0.24
PROM1O43490 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
PROM1O43490 NUS1P2-201ENST00000417358 873 ntBASIC16.56■□□□□ 0.24
PROM1O43490 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.56■□□□□ 0.24
PROM1O43490 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.56■□□□□ 0.24
PROM1O43490 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.56■□□□□ 0.24
PROM1O43490 FOSL1P1-201ENST00000511041 816 ntBASIC16.56■□□□□ 0.24
PROM1O43490 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.56■□□□□ 0.24
PROM1O43490 AC138894.3-201ENST00000603787 634 ntBASIC16.56■□□□□ 0.24
PROM1O43490 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PROM1O43490 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.56■□□□□ 0.24
PROM1O43490 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PROM1O43490 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PROM1O43490 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PROM1O43490 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.55■□□□□ 0.24
PROM1O43490 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.55■□□□□ 0.24
PROM1O43490 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms